View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_5 (Length: 634)
Name: NF3196_low_5
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 17 - 618
Target Start/End: Complemental strand, 14369444 - 14368838
Alignment:
| Q |
17 |
tctaaagacatctccagcagctgataaactagggttgccgtaggcagcaccatctatgttacatttaatccaggattggagaggaggatgccacatcacc |
116 |
Q |
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|||||||||| |||||||||||||||||| |||||| || | |||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||| |
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| T |
14369444 |
tctaaagacacctccagcagctgataaaccagggtttcccttggcagcaccatctatgttacatttgatc-aggaatggagaggagggtgccacatcacc |
14369346 |
T |
|
| Q |
117 |
tctttgataatcggtgctttagggtggtgaatagaaacattaaaaatcttgatca-----aagtctctgatagaattagaagatgttttctttgttgtct |
211 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| | |
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| T |
14369345 |
tctttgataatcggtgctctagggtggtgaacagaaacattaaaattcttgatcagggtaaagtctctgattgaattagaagatgttttctttgttgtgt |
14369246 |
T |
|
| Q |
212 |
ttcctgttagggctgtgctcgaaataatcacagaaatggaagatttccagttgatggttttgcgattaaatctagctcagtttctagcattccatatgac |
311 |
Q |
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||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
14369245 |
ttcatgctagggctgtgctcgaaataatcatggaaatggaagatttccagttgatggttttgctattaaatctagcttggtttctagcattccatatgac |
14369146 |
T |
|
| Q |
312 |
ataaaaaagattaaccaaagctgatagcaccaccactttgcattgtggtgaccaagataaatcacaaaatttccgcacatcttctaaacaagagaagtta |
411 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
14369145 |
ataaaaaagatcaaccaaagctgatagcaccaccactttgcattgtggtgaccaagataaatcacaaagtttccacacatcttctaaacaagagaagtta |
14369046 |
T |
|
| Q |
412 |
agagataaattaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacata |
511 |
Q |
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| T |
14369045 |
agagataaattaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacata |
14368946 |
T |
|
| Q |
512 |
aattaaatcactttgtaaaagaacaacagtatacaaatgagatactagtttattgtgatttatgacttttcatatttgaatgtagtttattatgc-ttaa |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14368945 |
aattaaatcactttgtaaaagaacaacagtatacaaatgagatactagtttattgtgatttatgacttttcatatttgaatgtagtttattatgctttaa |
14368846 |
T |
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| Q |
611 |
caaagaac |
618 |
Q |
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|||||||| |
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| T |
14368845 |
caaagaac |
14368838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 604
Target Start/End: Original strand, 14412275 - 14412325
Alignment:
| Q |
554 |
tactagtttattgtgatttatgacttttcatatttgaatgtagtttattat |
604 |
Q |
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| T |
14412275 |
tactaatttactgtgatttatggcttttcatatttgaatgtaatttcttat |
14412325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 355 - 516
Target Start/End: Original strand, 21818076 - 21818237
Alignment:
| Q |
355 |
tgtggtgaccaagataaatcacaaaatttccgcacatcttctaaacaagagaagttaagagataaattaagacaagatgctaaccaagaccagattctga |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21818076 |
tgtggtgaccaagataaatcacaaaatttccgcacatcttctaaacaagagaagttaagagataaattaagacaagatgctaaccaagatcagattctga |
21818175 |
T |
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| Q |
455 |
tggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaatta |
516 |
Q |
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| T |
21818176 |
tggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaatta |
21818237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 397
Target Start/End: Original strand, 46117506 - 46117587
Alignment:
| Q |
316 |
aaaagattaaccaaagctgatagcaccaccactttgcattgtggtgaccaagataaatcacaaaatttccgcacatcttcta |
397 |
Q |
| |
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||||||||||| ||||||| || || || || || |||||||| ||||||| ||||||||||| |||||| |||||||||| |
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| T |
46117506 |
aaaagattaacaaaagctggtaagacaactaccttacattgtggagaccaagctaaatcacaaattttccgaacatcttcta |
46117587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 385
Target Start/End: Original strand, 21852652 - 21852793
Alignment:
| Q |
244 |
gaaatggaagatttccagttgatggttttgcgattaaatctagctcagtttctagcattccatatgacataaaaaagattaaccaaagctgatagcacca |
343 |
Q |
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||||||| ||| ||||| |||||| || || |||||||||||| |||||| ||| ||| ||| || |||||||||||||||||| | || || | |
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| T |
21852652 |
gaaatggcagacttccaattgatgattgtgttgttaaatctagcttggtttctgacataccagatggaattaaaaagattaaccaaagcataaaggacaa |
21852751 |
T |
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| Q |
344 |
ccactttgcattgtggtgaccaagataaatcacaaaatttcc |
385 |
Q |
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||||||||||||| || ||||| || || ||||||| ||||| |
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| T |
21852752 |
ccactttgcattgaggagaccatgacaattcacaaattttcc |
21852793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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