View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_6 (Length: 626)
Name: NF3196_low_6
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 619
Target Start/End: Original strand, 44066678 - 44067283
Alignment:
| Q |
17 |
tttaattcaacaggaagagcaatccaaagatcacagctgaagttctttttcaagcatttctttgtggattatttgggttagttgattcaatatcatttta |
116 |
Q |
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| T |
44066678 |
tttaattcaacaggaagagcaacccaaagatcacagctgaagttctttttcaagcatttctttgtggattatttgggttagttgattcaatatcatttta |
44066777 |
T |
|
| Q |
117 |
tgtgtataannnnnnnnnnnnn-atcttaacatttgcaacatggatcattcagggcaaccttacaacaaaatttatacgttgaagcagtggttttggcag |
215 |
Q |
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| T |
44066778 |
tgtgtataattttattttattttatcttaacatttgcaacatggatcattcagggcaaccttacaacaaaatttatacgttgaagtagtggttttggcag |
44066877 |
T |
|
| Q |
216 |
gtgtaacatatgctacagtcatgtacaatttcattcctggtgcaacctttatcttagccgtttgttttgggtacgtaagccttcataccatggacacctt |
315 |
Q |
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| T |
44066878 |
gtgtaacatatgctacagtcatgtacaatttcattcctgctgcaacctttatcttagccgtttgttttgggtacgtaagccttcataccatggacacctt |
44066977 |
T |
|
| Q |
316 |
acgttacgtgacattgaatgtgtttacctcggttcggtatctcttatatgttttatcttctacactttatacatattttaaaaatacgcaaaatacaatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44066978 |
acgttacgtgacattgaatgtgtttacctcggttcggtctctcttatatgttttatcttctacactttatacatattttaaaaatacgcaaaatacaatg |
44067077 |
T |
|
| Q |
416 |
gacactgcgcgtatttgaacattaataattttgatgtcgagannnnnnnncccaactcttattactatttttgt--nnnnnnnnntcagattggaaagat |
513 |
Q |
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| T |
44067078 |
gacactgcgcgtatttgaacattaataattttgatgtcaagatattttttcccaactcttattactatttttgtaaaaaaaaaattcagattggaaagat |
44067177 |
T |
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| Q |
514 |
tgaacattggaacattaacagggaaggccaagatagttggaacattattgggaattagtggagcaatgattctcacattctataaaagtattgagattca |
613 |
Q |
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| T |
44067178 |
tgaacattggaacattaacagggaaggccaagatagttggaacattattgggaattagtggagcaatgattctcacattctataaaagtattgagattca |
44067277 |
T |
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| Q |
614 |
cctatg |
619 |
Q |
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|||||| |
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| T |
44067278 |
cctatg |
44067283 |
T |
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