View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_8 (Length: 566)
Name: NF3196_low_8
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 33675625 - 33675074
Alignment:
| Q |
1 |
aaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaactcaacccaaagaatgcgtaaggaattatataca |
100 |
Q |
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| T |
33675625 |
aaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaactcaacccaaagaatgcgtaaggaattatataca |
33675526 |
T |
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| Q |
101 |
acggcaagctttgcaagttgcaacaacnnnnnnncagcccagaaagatcaaaggactaattccttttattcatgttacaagataaatgaatagaatcaaa |
200 |
Q |
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| T |
33675525 |
acggcaagctttgcaagttgcaacaacaaaaaaacagcccagaaagatcaaaggactaattccttttattcatgttacaagataaatgaatagaatcaaa |
33675426 |
T |
|
| Q |
201 |
tttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggacaattattttccatgaggcatataacccaaagactgt |
300 |
Q |
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| T |
33675425 |
tttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggacaattattttccatgaggcatataacccaaagactgt |
33675326 |
T |
|
| Q |
301 |
taatgtaaaaattcaagctattaatttttcctccaatgcggttttgaatattcagaacacatctaagacctaaaccaaacaggctctgcagcaacagtgc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675325 |
taatgtaaaaattcaagctattaatttttcctccaatgcggttttgaatatccagaacacatctaagacctaaaccaaacaggctctgcagcaacagtgc |
33675226 |
T |
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| Q |
401 |
aagataaacaattttcacaattgtattgggccgattttacttactggcaatgaagcaggaatatgaatagaactatgagaagctttactgcgtgataagt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675225 |
aagataaacaattttcacaattgtattgggccgattttacttactggcaatgaagcaggaatatgaatagaactatgagaagctttactgcgtgataagt |
33675126 |
T |
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| Q |
501 |
tattctgaggataaaatgcagccgaggatggagctttcaatcttataactga |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675125 |
tattctgaggataaaatgcagccgaggatggagctttcaatcttataactga |
33675074 |
T |
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