View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3196_low_9 (Length: 508)

Name: NF3196_low_9
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3196_low_9
NF3196_low_9
[»] chr5 (2 HSPs)
chr5 (22-195)||(19441922-19442095)
chr5 (421-467)||(3181351-3181397)
[»] scaffold0015 (2 HSPs)
scaffold0015 (346-460)||(40762-40874)
scaffold0015 (38-93)||(41134-41189)
[»] chr1 (11 HSPs)
chr1 (342-467)||(23896529-23896657)
chr1 (414-460)||(24512674-24512720)
chr1 (38-86)||(23896904-23896952)
chr1 (346-422)||(24233804-24233880)
chr1 (403-458)||(25611382-25611437)
chr1 (50-93)||(25869446-25869489)
chr1 (421-467)||(24246887-24246933)
chr1 (417-467)||(24635183-24635233)
chr1 (346-386)||(24512603-24512643)
chr1 (403-467)||(24805455-24805519)
chr1 (286-318)||(25611528-25611560)
[»] chr4 (1 HSPs)
chr4 (45-93)||(11032168-11032216)
[»] chr7 (2 HSPs)
chr7 (423-453)||(39298689-39298719)
chr7 (55-84)||(24390645-24390674)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 19442095 - 19441922
Alignment:
Q  22 aggctacccgtcaatgtcctccaacaaatccgctgcgtttgcaagtcatggaatgctctaatctcagatgatttcgtatttgccaagaaacatctttcca 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19442095 aggctacccgtcaaagtcctccaacaaatccgctgcgtttgcaagtcgtggaatgctctaatctcagatgatttcgtattcgccaagaaacatctttcca 19441996  T
Q  122 tgtcaaagaaacgtcagcacctcatcacagccacatggatcaagccaacaaagttaattttaatgtcttatgaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19441995 tgtcaaagaaacgtcagcacctcatcacagccacatggatcaaaccaacaaagttaattttaatgtcttatgaa 19441922  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 467
Target Start/End: Original strand, 3181351 - 3181397
Alignment:
Q  421 tttggctacgatcctttcattgataattataaggttgtttatgtttt 467  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||||    
T  3181351 tttggttatgatcctttcattgataattataaggttgtttctgtttt 3181397  T

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Target: scaffold0015 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 460
Target Start/End: Complemental strand, 40874 - 40762
Alignment:
Q  346 aacccttctattagaaaattaaagaaattaccatctttagaatttccaaaagaagcaggtagaactatatttgcatttggctacgatcctttcattgata 445  Q
    |||||||  ||||||||| |||||||| |||| ||||||||  |||||| ||||| ||||  || | |||||||||||||||| |||||||||||||||     
T  40874 aacccttgcattagaaaagtaaagaaactaccttctttagatcttccaagagaagaaggttcaaatctatttgcatttggctatgatcctttcattgat- 40776  T
Q  446 attataaggttgttt 460  Q
     ||| ||||||||||    
T  40775 -ttacaaggttgttt 40762  T

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Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 41189 - 41134
Alignment:
Q  38 tcctccaacaaatccgctgcgtttgcaagtcatggaatgctctaatctcagatgat 93  Q
    |||||| |||| |||| ||||| ||||||||||||||| ||||||||||| |||||    
T  41189 tcctcctacaattccgttgcgtctgcaagtcatggaattctctaatctcaaatgat 41134  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 467
Target Start/End: Complemental strand, 23896657 - 23896529
Alignment:
Q  342 ttggaacccttctattagaaaattaaagaaattaccatctttagaatt---tccaaaagaagcaggtagaactatatttgcatttggctacgatcctttc 438  Q
    |||||||||||| |||||||||||||||||||||||  |||||||| |   ||| ||| ||   |||   |||| || ||| |||||||| |||||||||    
T  23896657 ttggaacccttccattagaaaattaaagaaattacccactttagaactacctcccaaaaaatttggtttcactagatatgcttttggctatgatcctttc 23896558  T
Q  439 attgataattataaggttgtttatgtttt 467  Q
    ||| ||||||| |||||||||| ||||||    
T  23896557 attcataattacaaggttgtttctgtttt 23896529  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 24512674 - 24512720
Alignment:
Q  414 atttgcatttggctacgatcctttcattgataattataaggttgttt 460  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||    
T  24512674 atttgcatttggctacgatcctttcattgataactacaaggttgttt 24512720  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 23896952 - 23896904
Alignment:
Q  38 tcctccaacaaatccgctgcgtttgcaagtcatggaatgctctaatctc 86  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||||||||    
T  23896952 tcctcctacaattccgctgcgtctgcaagtcatggaattctctaatctc 23896904  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 24233880 - 24233804
Alignment:
Q  346 aacccttctattagaaaattaaagaaattaccatctttagaatttccaaaagaagcaggtagaactatatttgcatt 422  Q
    |||||||  ||||||||| ||||||||||||| ||||||||  |||||| ||||| ||||  |||| ||||||||||    
T  24233880 aacccttgcattagaaaagtaaagaaattaccctctttagatcttccaagagaagaaggttcaactctatttgcatt 24233804  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 458
Target Start/End: Complemental strand, 25611437 - 25611382
Alignment:
Q  403 ggtagaactatatttgcatttggctacgatcctttcattgataattataaggttgt 458  Q
    |||| |||||||| |||||||||||||||||||| | |||||||||| || |||||    
T  25611437 ggtaaaactatatatgcatttggctacgatccttccgttgataattacaaagttgt 25611382  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 25869489 - 25869446
Alignment:
Q  50 tccgctgcgtttgcaagtcatggaatgctctaatctcagatgat 93  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||    
T  25869489 tccgctgcatttgcaagtcatggaattctctaatctcaaatgat 25869446  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 467
Target Start/End: Complemental strand, 24246933 - 24246887
Alignment:
Q  421 tttggctacgatcctttcattgataattataaggttgtttatgtttt 467  Q
    |||||||| |||||||||||||||||||| ||| |||||| ||||||    
T  24246933 tttggctatgatcctttcattgataattacaagattgtttctgtttt 24246887  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 24635233 - 24635183
Alignment:
Q  417 tgcatttggctacgatcctttcattgataattataaggttgtttatgtttt 467  Q
    ||||||||||||| || ||||||||||||| || |||||||||| ||||||    
T  24635233 tgcatttggctacaatactttcattgataactacaaggttgtttctgtttt 24635183  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 24512603 - 24512643
Alignment:
Q  346 aacccttctattagaaaattaaagaaattaccatctttaga 386  Q
    |||||||| ||||||||||||||||| ||||| ||||||||    
T  24512603 aacccttccattagaaaattaaagaagttaccctctttaga 24512643  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 24805519 - 24805455
Alignment:
Q  403 ggtagaactatatttgcatttggctacgatcctttcattgataattataaggttgtttatgtttt 467  Q
    ||||||||||||||| | |||||||| |||||||| ||| ||||||| || ||| ||| ||||||    
T  24805519 ggtagaactatatttacttttggctatgatccttttattcataattacaaagttttttctgtttt 24805455  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 25611560 - 25611528
Alignment:
Q  286 ctcgttgcttcttgtgatggtctcctttgtttc 318  Q
    ||||||||||||||||| |||||||||||||||    
T  25611560 ctcgttgcttcttgtgacggtctcctttgtttc 25611528  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 11032168 - 11032216
Alignment:
Q  45 acaaatccgctgcgtttgcaagtcatggaatgctctaatctcagatgat 93  Q
    |||| |||||||||| ||||| ||||||||| |||||||||||||||||    
T  11032168 acaactccgctgcgtatgcaaatcatggaatactctaatctcagatgat 11032216  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 453
Target Start/End: Original strand, 39298689 - 39298719
Alignment:
Q  423 tggctacgatcctttcattgataattataag 453  Q
    |||||||||||||||||||||||||||||||    
T  39298689 tggctacgatcctttcattgataattataag 39298719  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 84
Target Start/End: Original strand, 24390645 - 24390674
Alignment:
Q  55 tgcgtttgcaagtcatggaatgctctaatc 84  Q
    ||||||||||||||||||||||||||||||    
T  24390645 tgcgtttgcaagtcatggaatgctctaatc 24390674  T

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