View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3197_low_3 (Length: 215)
Name: NF3197_low_3
Description: NF3197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3197_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 51577529 - 51577343
Alignment:
| Q |
15 |
agcacagaagcatagttatctcgacacnnnnnnnggacatctacgtcggacaccttacaaaatacttccagagttaatgtttgtttgatctaaggagaga |
114 |
Q |
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| T |
51577529 |
agcacataagcatagttatctcgacacaaaaaaaggacatctacgtcggacaccttacaaaatacttccagagttaatgtttgtttgatctaaggagaga |
51577430 |
T |
|
| Q |
115 |
aacaactatatacaaatcaaaaccatatcaaaatacgacgttggaagaggttttagatgtcaaaatataatttctctttgcacattt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51577429 |
aacaactatatacaaatcaaaaccatatcaaaatacgacgttggaagaggttttagatgtcaaaatataatttctctttgcacattt |
51577343 |
T |
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