View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_high_1 (Length: 655)
Name: NF3198_high_1
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 1 - 648
Target Start/End: Complemental strand, 33905130 - 33904483
Alignment:
| Q |
1 |
gaagctcaatttcatcactgattatgacaggaacacagtgacttgcaattgcatcgaataagcgatttgatgatggcgtgtcgccagctatgttgagaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905130 |
gaagctcaatttcatcactgattatgacaggaacacagtgacttgcaattgcatcgaataagcgatttgatgatggcgtgtcgccagctatgttgagaca |
33905031 |
T |
|
| Q |
101 |
gaatttcgaagatcgcatgccgtttgttgcattcctcactccacctttctgtacacttccaaatgaaaaatgtacatctttttcttctttcagaagataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905030 |
gaatttcgaagatcgcatgccgtttgttgcattcctcactccacctttctgtacacttccaaatgaaaaatgtacatctttttcttctttcagaagataa |
33904931 |
T |
|
| Q |
201 |
aatagttcttgcctagcataaccaccctgtgcatgagaaaaacccactttgagcacaattaatgattttttaagttaaaaaacatgttacatgcaaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33904930 |
aatagttcttgcctagcataaccaccctgtgcatgagaaaaacccactttgagcacaattaatgattttttaagttaaaaaacatgttacatgcaaaatt |
33904831 |
T |
|
| Q |
301 |
tcaagtaaaattaagaacactttagcccttgtatgtatatgtaacgtacccaaggaagcatgggagaacagaatttctcttaaagtgaggatcagaagag |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33904830 |
tcaagtaaaattaagaacactttagcccttgtatgtatatgtaacgaacccaaggaagcatgggagaacagaatttctcttaaagtgaggatcagaagag |
33904731 |
T |
|
| Q |
401 |
taacaacaattcagaaaataatccagttaatagtattttttgtttacatagtaatatagaattgaatgctacatatagaggttgaaggtagttaatttac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33904730 |
taacaacaattcagaaaataatccagttaatagtattttttgtttacatagtaatatagaattgaatgctacatatagaggttgaaggtagttaatttac |
33904631 |
T |
|
| Q |
501 |
tagacaaaactattttattttctttagtgatgttagtaaaatcacaggtttaacttcttagctatgcttgctacatcaaatagatgtgctcgattatgcg |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
33904630 |
tagacaaaactattttattttctttagtgatgttagtaaaatcacaggtttaacttcttagctatgcttgctaaatcaaatagatgtgctcaattatgcg |
33904531 |
T |
|
| Q |
601 |
actaggacggctaaaccaacattttacctaacaaatctgtctgtgctg |
648 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
33904530 |
actaggacggttaaaccaacattttacctaacaaatctgtctgtgctg |
33904483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 9326471 - 9326697
Alignment:
| Q |
3 |
agctcaatttcatcactgattatgacaggaacacagtgacttgcaattgcatcgaataagcgatttgatgatggcgtgtcgccagctatgttgagacaga |
102 |
Q |
| |
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|||||||||||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||||| |||||||| || |||||||| |||||||| || || | |
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| T |
9326471 |
agctcaatttcatcactgatgatcacagggacacaatgactagcaattgcgtcgaacaagcggtttgatgaaggtgtgtcgcctgctatgtttaggcaaa |
9326570 |
T |
|
| Q |
103 |
atttcgaagatcgcatgccgtttgttgcattcctcactccacctttctgtacacttccaaatgaaaaatgtacatctttttcttctttcagaagataaaa |
202 |
Q |
| |
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||||||| | ||||| || | |||||| ||| | | |||| |||| || | ||||||||||||||||||||||| ||||| | ||||| | |||| | |
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| T |
9326571 |
atttcgacaaacgcattccttctgttgctttcttgattccatctttttgaatgcttccaaatgaaaaatgtacatccttttcatttttcaaagaataata |
9326670 |
T |
|
| Q |
203 |
tagttcttgcctagcataaccaccctg |
229 |
Q |
| |
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|||||||||||| ||||||| ||||| |
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|
| T |
9326671 |
tagttcttgcctcacataacctccctg |
9326697 |
T |
|
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