View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3198_high_21 (Length: 355)

Name: NF3198_high_21
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3198_high_21
NF3198_high_21
[»] chr4 (9 HSPs)
chr4 (56-169)||(47125216-47125329)
chr4 (239-340)||(47125402-47125503)
chr4 (1-46)||(31995943-31995988)
chr4 (6-46)||(32901328-32901368)
chr4 (3-45)||(39158105-39158147)
chr4 (7-45)||(44496027-44496065)
chr4 (3-44)||(336837-336877)
chr4 (1-45)||(2738295-2738339)
chr4 (6-46)||(52372224-52372264)
[»] chr2 (9 HSPs)
chr2 (1-46)||(21313511-21313556)
chr2 (2-46)||(3771370-3771414)
chr2 (3-45)||(5427252-5427294)
chr2 (8-42)||(12994740-12994774)
chr2 (1-46)||(7664096-7664141)
chr2 (4-45)||(18531601-18531642)
chr2 (6-46)||(5095985-5096025)
chr2 (6-46)||(30220842-30220882)
chr2 (6-46)||(30416359-30416399)
[»] chr1 (11 HSPs)
chr1 (3-46)||(45863750-45863793)
chr1 (1-42)||(45430802-45430843)
chr1 (6-45)||(26101394-26101433)
chr1 (7-42)||(31974723-31974758)
chr1 (3-42)||(33173720-33173759)
chr1 (7-46)||(45350128-45350167)
chr1 (3-44)||(1922454-1922495)
chr1 (1-45)||(12306161-12306205)
chr1 (1-45)||(17123502-17123546)
chr1 (6-42)||(25994948-25994984)
chr1 (6-46)||(34157805-34157845)
[»] chr5 (13 HSPs)
chr5 (5-45)||(27005510-27005550)
chr5 (6-46)||(8681842-8681882)
chr5 (1-45)||(19844336-19844380)
chr5 (7-46)||(6538869-6538908)
chr5 (6-45)||(35464615-35464654)
chr5 (3-46)||(40039289-40039332)
chr5 (7-45)||(2429010-2429048)
chr5 (3-45)||(26686881-26686923)
chr5 (3-45)||(26956612-26956654)
chr5 (6-43)||(3674881-3674918)
chr5 (5-45)||(25345340-25345380)
chr5 (1-45)||(33598963-33599006)
chr5 (1-45)||(33958287-33958331)
[»] chr8 (4 HSPs)
chr8 (3-42)||(37942936-37942975)
chr8 (5-43)||(43186298-43186336)
chr8 (1-46)||(45406011-45406056)
chr8 (5-45)||(33115905-33115945)
[»] chr7 (3 HSPs)
chr7 (6-45)||(2849553-2849592)
chr7 (7-46)||(49167888-49167927)
chr7 (1-46)||(42598235-42598280)
[»] chr3 (6 HSPs)
chr3 (6-45)||(39901591-39901630)
chr3 (7-45)||(38363254-38363292)
chr3 (3-44)||(48789328-48789369)
chr3 (3-44)||(48789613-48789654)
chr3 (6-46)||(4189736-4189776)
chr3 (6-46)||(38693599-38693639)
[»] chr6 (1 HSPs)
chr6 (8-46)||(6256434-6256472)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 47125216 - 47125329
Alignment:
Q  56 atgataagccactttatagtattctttgtactcatttttctccttcttcttccattgtttattatatctacttgtctcttactttcttatgttatgttta 155  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47125216 atgataagccactttatagtattctttgtactcattttcctccttcttcttccattgtttattatatcaacttgtctcttactttcttatgttatgttta 47125315  T
Q  156 cactttgtggattc 169  Q
    ||||||||||||||    
T  47125316 cactttgtggattc 47125329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 47125402 - 47125503
Alignment:
Q  239 atgataattttatatttatttaatagaagagtaaataaaactnnnnnnnctcattgtatgtctggtattgcaaagaaagtgtagaaaaatatttatcaaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47125402 atgataattttatatttatttaatagaagagtaaataaaactaaaaaaactcattgtatgtctggtattgtaaagaaagtgtagaaaaatatttatcaaa 47125501  T
Q  339 tg 340  Q
    ||    
T  47125502 tg 47125503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31995943 - 31995988
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||||| |||||||| |||| |||||||||||||||||||||    
T  31995943 tatcacaaaatttatcaaaaaatagttgtacaaatatcatttctca 31995988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 32901368 - 32901328
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  32901368 caaaaattatcaaaaaatagttgtacaaatatcatttctca 32901328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 39158147 - 39158105
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||    
T  39158147 tcacaaaaattatcaaaaaatgattgttcaaatatcatttctc 39158105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 44496027 - 44496065
Alignment:
Q  7 aaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  44496027 aaaaattatcaaaaaataattgtacaactatcatttctc 44496065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 336837 - 336877
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttct 44  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  336837 tcacaaaaattgtcaaa-aataattgtacaaatatcatttct 336877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2738295 - 2738339
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||| ||||| ||| ||||| |||||||||||||||    
T  2738295 tatcacaaaaattgtcaaaaaatgattgttcaaatatcatttctc 2738339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 52372224 - 52372264
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||| |||||||| | ||||||||||||||||||||||||    
T  52372224 caaaagttatcaaaaattaattgtacaaatatcatttctca 52372264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21313511 - 21313556
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  21313511 tatcacaaaaattatcaaagaatgattgtacaaatatcatttctca 21313556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 3771414 - 3771370
Alignment:
Q  2 atcacaaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||    
T  3771414 atcacaaaaattattaaaaaatgattgtacaaatatcatttctca 3771370  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 5427252 - 5427294
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||||||| | ||||||||||| |||||||||||    
T  5427252 tcacaaaaattatcaaaaattaattgtacaattatcatttctc 5427294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 12994740 - 12994774
Alignment:
Q  8 aaaattatcaaagaataattgtacaaatatcattt 42  Q
    |||||||||||| ||||||||||||||||||||||    
T  12994740 aaaattatcaaaaaataattgtacaaatatcattt 12994774  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7664096 - 7664141
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||||| || || ||||||||| ||||||||||||||||    
T  7664096 tatcacaaaaattgtccaaaaataattgttcaaatatcatttctca 7664141  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 18531642 - 18531601
Alignment:
Q  4 cacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    |||||||||| ||||| |||| ||||||||||||||||||||    
T  18531642 cacaaaaattgtcaaaaaatagttgtacaaatatcatttctc 18531601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 5095985 - 5096025
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||||||| | ||| ||||||||||||||||||||||    
T  5095985 caaaaattatcacaaaatgattgtacaaatatcatttctca 5096025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 30220842 - 30220882
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||| |||||| |||||| |||||||||||||||||||||    
T  30220842 caaaagttatcacagaatagttgtacaaatatcatttctca 30220882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 30416399 - 30416359
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||| ||||| ||| ||||||||||||||||||||||    
T  30416399 caaaaattgtcaaaaaatgattgtacaaatatcatttctca 30416359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 45863750 - 45863793
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  45863750 tcacaaaaattatcaaaaaataattgtacaaatatcatttctca 45863793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45430843 - 45430802
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcattt 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  45430843 tatcacaaaaattattaaaaaataattgtacaaatatcattt 45430802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 26101433 - 26101394
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  26101433 caaaaattatcacaaaataattgtacaaatatcatttctc 26101394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 31974758 - 31974723
Alignment:
Q  7 aaaaattatcaaagaataattgtacaaatatcattt 42  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31974758 aaaaattatcaaaaaataattgtacaaatatcattt 31974723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 33173720 - 33173759
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcattt 42  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  33173720 tcacaaaaattataaaaaaataattgtacaaatatcattt 33173759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 45350128 - 45350167
Alignment:
Q  7 aaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  45350128 aaaaattatcacaaaataattgtacaaatatcatttctca 45350167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 1922454 - 1922495
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttct 44  Q
    ||||||||||||||||| | | ||||||||||||||||||||    
T  1922454 tcacaaaaattatcaaaaagtgattgtacaaatatcatttct 1922495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12306161 - 12306205
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||| | | | |||||||||||||||||||||||||    
T  12306161 tatcacaaaaattgttataaaataattgtacaaatatcatttctc 12306205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17123546 - 17123502
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||||||||  |||||||||||| || |||||||||    
T  17123546 tatcacaaaaattatcaataaataattgtacatatgtcatttctc 17123502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 25994948 - 25994984
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcattt 42  Q
    |||||||||||| | ||||||||||||||||||||||    
T  25994948 caaaaattatcacaaaataattgtacaaatatcattt 25994984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 34157845 - 34157805
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||||||| | ||||||| ||||||||||||||||||    
T  34157845 caaaaattatcacaaaataattatacaaatatcatttctca 34157805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 27005510 - 27005550
Alignment:
Q  5 acaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  27005510 acaaaaattatcaaaaaataattgtacaaatatcatttctc 27005550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 8681882 - 8681842
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  8681882 caaaaattatcaaaaaatgattgtacaaatatcatttctca 8681842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19844336 - 19844380
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||    
T  19844336 tatcacaaaagttatcaaaaaatagttgtacaaatatcatttctc 19844380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 6538908 - 6538869
Alignment:
Q  7 aaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  6538908 aaaaattatcacaaaataattgtacaaatatcatttctca 6538869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 35464615 - 35464654
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  35464615 caaaaattatcaaaaaataatcgtacaaatatcatttctc 35464654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 40039332 - 40039289
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||    
T  40039332 tcacaaaaattatcaaaaaatagttgttcaaatatcatttctca 40039289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 2429048 - 2429010
Alignment:
Q  7 aaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  2429048 aaaaattatcaaaaaataattgtacaaaaatcatttctc 2429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 26686923 - 26686881
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||    
T  26686923 tcacaaaaattattaaaaaataattgtataaatatcatttctc 26686881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 26956654 - 26956612
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||    
T  26956654 tcacaaaaattattaaaaaataattgtataaatatcatttctc 26956612  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 3674881 - 3674918
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttc 43  Q
    |||||||||||||  |||||||||||||||||||||||    
T  3674881 caaaaattatcaagaaataattgtacaaatatcatttc 3674918  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 25345380 - 25345340
Alignment:
Q  5 acaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  25345380 acaaaaattatcataaattaattgtacaaatatcatttctc 25345340  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33599006 - 33598963
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||    
T  33599006 tatcacaaaaattatcaaa-aatacatgtacaaatatcatttctc 33598963  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33958287 - 33958331
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    |||||||||||||||| || ||| ||||| |||||||||||||||    
T  33958287 tatcacaaaaattatccaaaaatgattgttcaaatatcatttctc 33958331  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 37942936 - 37942975
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcattt 42  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  37942936 tcacaaaaattgtcaaaaaataattgtacaaatatcattt 37942975  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 43186336 - 43186298
Alignment:
Q  5 acaaaaattatcaaagaataattgtacaaatatcatttc 43  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  43186336 acaaaaattatcacaaaataattgtacaaatatcatttc 43186298  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45406011 - 45406056
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||||||| ||| |||| |||| ||||||||||||||||    
T  45406011 tatcacaaaaattattaaaaaatagttgttcaaatatcatttctca 45406056  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 33115945 - 33115905
Alignment:
Q  5 acaaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||||||| | ||||||| |||||||||||||||||    
T  33115945 acaaaaattatcacaaaataattatacaaatatcatttctc 33115905  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 2849553 - 2849592
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  2849553 caaaagttatcaaaaaataattgtacaaatatcatttctc 2849592  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 49167888 - 49167927
Alignment:
Q  7 aaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  49167888 aaaaattatcacaaaataattgtacaaatatcatttctca 49167927  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42598235 - 42598280
Alignment:
Q  1 tatcacaaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    ||||||||||||| | ||| |||| |||||||||||||||||||||    
T  42598235 tatcacaaaaattgttaaaaaatagttgtacaaatatcatttctca 42598280  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 39901630 - 39901591
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  39901630 caaaaattatcaaaaaatgattgtacaaatatcatttctc 39901591  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 38363254 - 38363292
Alignment:
Q  7 aaaaattatcaaagaataattgtacaaatatcatttctc 45  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  38363254 aaaaattattaaaaaataattgtacaaatatcatttctc 38363292  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 48789369 - 48789328
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttct 44  Q
    ||||||||||||||| | ||||||||| ||||||||||||||    
T  48789369 tcacaaaaattatcagaaaataattgttcaaatatcatttct 48789328  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 48789654 - 48789613
Alignment:
Q  3 tcacaaaaattatcaaagaataattgtacaaatatcatttct 44  Q
    ||||||||||||||| | ||||||||| ||||||||||||||    
T  48789654 tcacaaaaattatcagaaaataattgttcaaatatcatttct 48789613  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 4189776 - 4189736
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||||||| | ||||||| ||||||||||||||||||    
T  4189776 caaaaattatcacaaaataattctacaaatatcatttctca 4189736  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 38693599 - 38693639
Alignment:
Q  6 caaaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||||||||| | ||||||||| ||||||||||||||||    
T  38693599 caaaaattatcacataataattgtgcaaatatcatttctca 38693639  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 6256472 - 6256434
Alignment:
Q  8 aaaattatcaaagaataattgtacaaatatcatttctca 46  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  6256472 aaaattgtcaaaaaataattgtacaaatatcatttctca 6256434  T

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