View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3198_high_22 (Length: 339)

Name: NF3198_high_22
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3198_high_22
NF3198_high_22
[»] chr4 (6 HSPs)
chr4 (174-319)||(45837654-45837799)
chr4 (173-319)||(3311902-3312048)
chr4 (173-298)||(37941432-37941557)
chr4 (173-316)||(49947113-49947256)
chr4 (165-248)||(25040348-25040431)
chr4 (173-245)||(12813983-12814055)
[»] chr5 (11 HSPs)
chr5 (173-316)||(17943174-17943317)
chr5 (170-316)||(32664371-32664517)
chr5 (173-299)||(8376066-8376192)
chr5 (173-316)||(17009877-17010020)
chr5 (179-289)||(8376231-8376341)
chr5 (171-298)||(36516940-36517067)
chr5 (173-299)||(20027662-20027788)
chr5 (171-288)||(14481690-14481807)
chr5 (172-268)||(31308780-31308876)
chr5 (70-103)||(2999631-2999664)
chr5 (209-245)||(10497240-10497276)
[»] scaffold0548 (1 HSPs)
scaffold0548 (173-299)||(9809-9935)
[»] chr3 (7 HSPs)
chr3 (173-299)||(15103069-15103195)
chr3 (170-299)||(20129438-20129567)
chr3 (173-316)||(13371888-13372031)
chr3 (172-301)||(15097310-15097439)
chr3 (209-299)||(52613054-52613144)
chr3 (247-303)||(19911211-19911267)
chr3 (174-245)||(27356629-27356700)
[»] chr1 (5 HSPs)
chr1 (174-316)||(17176038-17176180)
chr1 (1-120)||(29253834-29253953)
chr1 (174-299)||(36478701-36478826)
chr1 (112-170)||(29254138-29254196)
chr1 (175-258)||(41944033-41944116)
[»] chr8 (5 HSPs)
chr8 (173-316)||(6813846-6813989)
chr8 (170-285)||(16230243-16230358)
chr8 (173-293)||(25043233-25043353)
chr8 (171-268)||(4685745-4685842)
chr8 (175-234)||(14128592-14128651)
[»] chr7 (9 HSPs)
chr7 (172-316)||(23925731-23925875)
chr7 (172-316)||(27289029-27289173)
chr7 (173-316)||(22938857-22939000)
chr7 (173-316)||(24501639-24501782)
chr7 (172-297)||(21740320-21740443)
chr7 (172-268)||(11506352-11506448)
chr7 (172-268)||(11513075-11513171)
chr7 (172-235)||(14154132-14154195)
chr7 (173-245)||(20571462-20571534)
[»] chr6 (6 HSPs)
chr6 (170-316)||(22474477-22474623)
chr6 (171-299)||(16729695-16729823)
chr6 (171-282)||(33292415-33292526)
chr6 (174-299)||(20511834-20511959)
chr6 (172-245)||(28247598-28247671)
chr6 (176-263)||(14267287-14267374)
[»] scaffold0089 (1 HSPs)
scaffold0089 (172-316)||(32775-32919)
[»] chr2 (6 HSPs)
chr2 (170-299)||(22197913-22198041)
chr2 (171-316)||(33737026-33737171)
chr2 (173-316)||(12630146-12630289)
chr2 (173-268)||(5562545-5562640)
chr2 (108-146)||(32718510-32718548)
chr2 (108-146)||(32724915-32724953)
[»] scaffold0038 (1 HSPs)
scaffold0038 (172-245)||(47760-47833)
[»] scaffold0665 (1 HSPs)
scaffold0665 (175-234)||(2794-2853)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 45837654 - 45837799
Alignment:
Q  174 actaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacaga 273  Q
    |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  45837654 actaccacaattttggcttttaatagcacaattttaatagcccttctggataaatgctattaaaaatgcaacccatagacgtgttatagcacttttcaga 45837753  T
Q  274 aagcgctaagaaaaacttgttaaaaattggactggatagcgctctt 319  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  45837754 aagcgctaagaaaaacttgttaaaaattggactagatagcgctctt 45837799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 173 - 319
Target Start/End: Original strand, 3311902 - 3312048
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  3311902 cactaccacaattttggcttttaatagcacaatttcaatagcgcatctggataaacgctattaaaaatgcaacccatagacctgttatagcgctttacag 3312001  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctctt 319  Q
    |||| ||||||||||||||||| ||||||||||| ||| ||||||||    
T  3312002 aaagtgctaagaaaaacttgtttaaaattggactagatggcgctctt 3312048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 173 - 298
Target Start/End: Original strand, 37941432 - 37941557
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  37941432 cactatcacaattttggcttttaatagcataattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacag 37941531  T
Q  273 aaagcgctaagaaaaacttgttaaaa 298  Q
    |||| |||||||||||| ||||||||    
T  37941532 aaagagctaagaaaaacatgttaaaa 37941557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 49947256 - 49947113
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||   |||||||||||||| |||| | |||    
T  49947256 cactaccacaattttgtcttttaatagcacaattttaatagcgtttttagataaatgctattaaaaatgcaaattatagacctgttataacactcttcag 49947157  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    |||||||||| |||| ||||| ||||| |||  | |||||||||    
T  49947156 aaagcgctaaaaaaagcttgtgaaaaactgggttagatagcgct 49947113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 25040431 - 25040348
Alignment:
Q  165 aaataattcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaaccca 248  Q
    |||| ||||||||| |||||||||| |||||||||| |||||| |||||| ||| |||||||| |||||||||||  |||||||    
T  25040431 aaattattcactactacaattttggtttttaatagcgcaattttaatagcttttatggataaacgctattaaaaacacaaccca 25040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 12813983 - 12814055
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaac 245  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||| |  ||||||||||||||||| |||||    
T  12813983 cactaccacaattttggcttttaatagcgcaagtataatagcgtttttatataaatgctattaaaaaggcaac 12814055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 17943317 - 17943174
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  17943317 cactaccacaattttggcttttaatagcattattttaatagcgtttctggataaatgctattaaaaatgcaactcatagacctgttatagcacttttcag 17943218  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    ||||||||||| |||||||||||||||||||| | |||||||||    
T  17943217 aaagcgctaaggaaaacttgttaaaaattggattagatagcgct 17943174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 32664371 - 32664517
Alignment:
Q  170 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 269  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||     
T  32664371 attcactaccacaattttggcttttaatagcattattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttt 32664470  T
Q  270 cagaaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    |||||||||||||| |||||||||||||||||||  | |||||||||    
T  32664471 cagaaagcgctaaggaaaacttgttaaaaattgggttagatagcgct 32664517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 8376066 - 8376192
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  8376066 cactaccacaattttggattttaatagcacaattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagacctgttatagcacttttcag 8376165  T
Q  273 aaagcgctaagaaaaacttgttaaaaa 299  Q
    ||||||||||||||||| |||||||||    
T  8376166 aaagcgctaagaaaaacatgttaaaaa 8376192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 17010020 - 17009877
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||   ||||||||||||||||||| | |||    
T  17010020 cactaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagacctgttatagcactcttcag 17009921  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    |||||||||| |||| ||||||||||| |||  | |||||||||    
T  17009920 aaagcgctaaaaaaagcttgttaaaaactgggttagatagcgct 17009877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 8376341 - 8376231
Alignment:
Q  179 cacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacagaaagcg 278  Q
    |||||| ||||||||||||||||||| || ||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  8376341 cacaatattggcttttaatagcacaagtttaatagcgcttctagataaatgctattgaaaatgcaacccatagacctgttatagcacttttcagaaagcg 8376242  T
Q  279 ctaagaaaaac 289  Q
    |||||||||||    
T  8376241 ctaagaaaaac 8376231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 298
Target Start/End: Original strand, 36516940 - 36517067
Alignment:
Q  171 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 270  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||  || |||||||||||||||||||| ||||| ||||||||||||||||||||||      
T  36516940 ttcactactacaattttggcctttaatagcacaattttaatagcacttatggataaatgctattaaaaaggcaactcatagacctgttatagcactttca 36517039  T
Q  271 agaaagcgctaagaaaaacttgttaaaa 298  Q
    | |||||||||||||||| |||||||||    
T  36517040 aaaaagcgctaagaaaaatttgttaaaa 36517067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 20027662 - 20027788
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||| || |||||||||||||||||||||||  |||| ||||||| |||  ||| ||     
T  20027662 cactaccacaattttggcttttaatagcgtaattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagtcctgttaaagctgttttcaa 20027761  T
Q  273 aaagcgctaagaaaaacttgttaaaaa 299  Q
    ||||||| ||||||||| |||||||||    
T  20027762 aaagcgccaagaaaaacatgttaaaaa 20027788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 288
Target Start/End: Original strand, 14481690 - 14481807
Alignment:
Q  171 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 270  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||||| |  ||||| |||||||||||| |||   |||||||| |||||||||| | |    
T  14481690 ttcattaccacaattttggcctttaatagcacaattttaatagcgtttgtacataaaagctattaaaaatacaaattatagacctattatagcactctgc 14481789  T
Q  271 agaaagcgctaagaaaaa 288  Q
    |||||||||||| |||||    
T  14481790 agaaagcgctaaaaaaaa 14481807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 31308780 - 31308876
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt 268  Q
    ||||||| ||||||||||||||||||||| ||| || |||||||||| |  ||||| |||||| |||| ||||| || | ||||  |||||||||||    
T  31308780 tcactactacaattttggcttttaatagcgcaaatttaatagcgtttttacataaacgctattgaaaaggcaacacagataccttctatagcacttt 31308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 2999664 - 2999631
Alignment:
Q  70 tgcagaaaggaaaaattgcaacaagaataccact 103  Q
    |||| |||||||||||||||||||||||||||||    
T  2999664 tgcacaaaggaaaaattgcaacaagaataccact 2999631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 10497240 - 10497276
Alignment:
Q  209 aatagcgtttctggataaatgctattaaaaatgcaac 245  Q
    ||||||| || ||||||||||||||||||||||||||    
T  10497240 aatagcgcttatggataaatgctattaaaaatgcaac 10497276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 9809 - 9935
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  9809 cactaccacaattttggcttttaatagcacaattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacag 9908  T
Q  273 aaagcgctaagaaaaacttgttaaaaa 299  Q
    ||||||||||||||||| || ||||||    
T  9909 aaagcgctaagaaaaacatgataaaaa 9935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 173 - 299
Target Start/End: Complemental strand, 15103195 - 15103069
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  15103195 cactaccacaattttggcttttaatagcacaattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacag 15103096  T
Q  273 aaagcgctaagaaaaacttgttaaaaa 299  Q
    ||||||||||||||||| || ||||||    
T  15103095 aaagcgctaagaaaaacatgataaaaa 15103069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 20129438 - 20129567
Alignment:
Q  170 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 269  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||| | |||||||||||||||||||||||   ||||||||||||||||||| |     
T  20129438 attcactaccataattttggcttttaatagcacaattttaatagcttttatagataaatgctattaaaaatgcaaattatagacctgttatagcactctt 20129537  T
Q  270 cagaaagcgctaagaaaaacttgttaaaaa 299  Q
    ||||||||| ||| |||||||||| |||||    
T  20129538 cagaaagcgttaaaaaaaacttgtaaaaaa 20129567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 13372031 - 13371888
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||| || || ||||| |||||||||||||||||  || |||||||||||||  ||| |||    
T  13372031 cactaccacaattttggtttttaatagcataattttaatagcgcttttgaataaacgctattaaaaatgcaacttatggacctgttatagcggttttcag 13371932  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    ||||||||||||||||| ||||||||| |||  | |||||||||    
T  13371931 aaagcgctaagaaaaacatgttaaaaactgggttagatagcgct 13371888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 15097439 - 15097310
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 271  Q
    |||||| ||||||||||| ||||||||||| || || ||| ||  || ||||||||||||||| |||| || ||||| ||| |||||||||||||||  |    
T  15097439 tcactatcacaattttggtttttaatagcataagtttaatggctcttatggataaatgctattgaaaacgccacccacagatctgttatagcacttttta 15097340  T
Q  272 gaaagcgctaagaaaaacttgttaaaaatt 301  Q
    ||||| |||||||||||| |||||||||||    
T  15097339 gaaagggctaagaaaaacatgttaaaaatt 15097310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 52613054 - 52613144
Alignment:
Q  209 aatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacagaaagcgctaagaaaaacttgttaaaaa 299  Q
    ||||||| |||||||||||||||||| ||||||| ||| | |||||||||||||||||||  |||||||||||||||||||  ||||||||    
T  52613054 aatagcgcttctggataaatgctattgaaaatgccaccgagagacctgttatagcactttttagaaagcgctaagaaaaacacgttaaaaa 52613144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 19911267 - 19911211
Alignment:
Q  247 catagacctgttatagcactttacagaaagcgctaagaaaaacttgttaaaaattgg 303  Q
    ||||||| ||||| |||||||| || ||  |||||| ||||||||||||||||||||    
T  19911267 catagacatgttagagcacttttcataatacgctaaaaaaaacttgttaaaaattgg 19911211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 27356700 - 27356629
Alignment:
Q  174 actaccacaattttggcttttaatagcacaatttcaatagcgtt-tctggataaatgctattaaaaatgcaac 245  Q
    ||||| ||||||||| ||||||||||||| | || ||||||||| ||| || ||| |||||||||||||||||    
T  27356700 actactacaattttgtcttttaatagcaccactttaatagcgttatctcga-aaacgctattaaaaatgcaac 27356629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 174 - 316
Target Start/End: Original strand, 17176038 - 17176180
Alignment:
Q  174 actaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacaga 273  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||    
T  17176038 actaccacaattttggcttttaatagcataattttaatagcgtttctggataaatgctattaaaaatgcaactcatagacctattatagcacttttcaga 17176137  T
Q  274 aagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    |||||||||| |||||||||||||||||||  | |||||||||    
T  17176138 aagcgctaaggaaaacttgttaaaaattgggttagatagcgct 17176180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 29253834 - 29253953
Alignment:
Q  1 cttataagaaagcgaaatcgatccagcttgataatgttaatgttgacataattggtcaaaatgatttggtgcagaaaggaaaaattgcaacaagaatacc 100  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  29253834 cttataagaaagcgaaatcaatccagcttgataaagttaatgttgacataattggtcaaaatgattcggtgtagaaaggaaaaattgcaacaagaatacc 29253933  T
Q  101 actgattcactgaatgatta 120  Q
     |||||||||||||||||||    
T  29253934 cctgattcactgaatgatta 29253953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 36478701 - 36478826
Alignment:
Q  174 actaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacaga 273  Q
    |||||||||||||||||||||||||||| ||||| || ||| ||| |||||||||||||||||| ||||||| |||||| || |||||||||||| ||||    
T  36478701 actaccacaattttggcttttaatagcataattttaacagcttttatggataaatgctattaaagatgcaactcatagatctattatagcacttttcaga 36478800  T
Q  274 aagcgctaagaaaaacttgttaaaaa 299  Q
    ||||||||| ||| || |||||||||    
T  36478801 aagcgctaaaaaagacatgttaaaaa 36478826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 29254138 - 29254196
Alignment:
Q  112 gaatgattaatatgaaagcaaacattaaacaccgatggatcacacacacaaccaaataa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29254138 gaatgattaatatgaaagcaaacattaaacaccgatggatcacacacacaaccaaataa 29254196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 41944033 - 41944116
Alignment:
Q  175 ctaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgtt 258  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||| || ||||||||||||||| | ||||| ||||||||||||    
T  41944033 ctaccacaattttagcttttaatagcacaattttaataacgtttatgaataaatgctattaaataggcaactcatagacctgtt 41944116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 173 - 316
Target Start/End: Original strand, 6813846 - 6813989
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |||| |||    
T  6813846 cactaccacaattttggcttttaatagcgcaattttaatagcgtttatggataaaagctattaaaaatgcaactcataggcctgttatagcgcttttcag 6813945  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    ||||||||||||||||| |||||||||||||  | |||||||||    
T  6813946 aaagcgctaagaaaaacatgttaaaaattgggttagatagcgct 6813989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 16230243 - 16230358
Alignment:
Q  170 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 269  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || || ||||||||||||||||     
T  16230243 attcactaccacaattttggcttttaatagcacaattttaatagcgtttctagataaatgctattaaaaatgcaactcacaggcctgttatagcactttg 16230342  T
Q  270 cagaaagcgctaagaa 285  Q
    |||||||||| |||||    
T  16230343 cagaaagcgccaagaa 16230358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 25043353 - 25043233
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    |||||||||||||||||  ||||||||||||| || ||||||||||||  ||||| ||||||| ||||||||   ||||| || ||||||||||   |||    
T  25043353 cactaccacaattttggtctttaatagcacaaatttaatagcgtttctacataaacgctattacaaatgcaaattatagatctattatagcactccgcag 25043254  T
Q  273 aaagcgctaagaaaaacttgt 293  Q
    |||||||||| ||||||||||    
T  25043253 aaagcgctaaaaaaaacttgt 25043233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 4685842 - 4685745
Alignment:
Q  171 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt 268  Q
    |||||||| |||||||||| |||||||||| ||| || |||||||||||   ||||| ||| ||||||||| ||  || |||| ||||||||| ||||    
T  4685842 ttcactactacaattttggtttttaatagcgcaaatttaatagcgtttcaacataaacgctgttaaaaatgtaaaacacagacatgttatagctcttt 4685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 14128592 - 14128651
Alignment:
Q  175 ctaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctatt 234  Q
    |||| |||||||| | |||||||||| |||||| ||||||||||||  ||||||||||||    
T  14128592 ctactacaattttagtttttaatagcgcaattttaatagcgtttctatataaatgctatt 14128651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 172 - 316
Target Start/End: Complemental strand, 23925875 - 23925731
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 271  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||  ||||||||||||||| | |||||||    
T  23925875 tcactaccacaattttggcttttaatagcacaattttaatagcgtttatggataaatgctatgaaaaatgcaaatcatagacctgttataacgctttaca 23925776  T
Q  272 gaaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
     |||||||||||||||| |||||||||| |||  | |||||||||    
T  23925775 taaagcgctaagaaaaatttgttaaaaactgggttagatagcgct 23925731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 172 - 316
Target Start/End: Complemental strand, 27289173 - 27289029
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 271  Q
    |||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||| |||||| |||||||||||||||| ||    
T  27289173 tcactaccacaattttggcttttaatagcacaattttaataacatttttggataaatgctattaaaaatgcaatccataggcctgttatagcactttgca 27289074  T
Q  272 gaaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
     ||||||||||||||||||| ||||||| |||  | |||||||||    
T  27289073 aaaagcgctaagaaaaactttttaaaaaatgggttagatagcgct 27289029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 173 - 316
Target Start/End: Original strand, 22938857 - 22939000
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||    
T  22938857 cactaccacaatttgggcttttaatagcacaattttaatagcatttttggataaacgctattaaaaatgcaacccataggcctgttatagcactttgcag 22938956  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    ||||||||||||||||||| || |||| |||  | |||||||||    
T  22938957 aaagcgctaagaaaaactttttgaaaaatgggttagatagcgct 22939000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 24501782 - 24501639
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||   ||||||||||||||||||  | |||    
T  24501782 cactaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagacctgttatagcacccttcag 24501683  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    ||| |||||| |||| ||||||||||| |||  | |||||||||    
T  24501682 aaaacgctaaaaaaagcttgttaaaaactgggttagatagcgct 24501639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 297
Target Start/End: Complemental strand, 21740443 - 21740320
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 271  Q
    |||||| |||||||||||||||||||||||  |||| |||||| ||| || |||| |||||||||||||||||   ||||||||||||||||||||| ||    
T  21740443 tcactatcacaattttggcttttaatagca--attttaatagcatttttgaataactgctattaaaaatgcaatttatagacctgttatagcacttttca 21740346  T
Q  272 gaaagcgctaagaaaaacttgttaaa 297  Q
    ||||||| |||||||||| |||||||    
T  21740345 gaaagcgttaagaaaaacatgttaaa 21740320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 11506448 - 11506352
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt 268  Q
    ||||||||||||||||   ||| ||||||| ||||| ||||| | |||| ||||||| |||||||||||||||| ||||||| ||||||| ||||||    
T  11506448 tcactaccacaattttaaatttcaatagcagaattttaatagagcttctagataaatactattaaaaatgcaacgcatagacatgttataacacttt 11506352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 11513171 - 11513075
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt 268  Q
    ||||||||||||||||   ||| ||||||| ||||| ||||| | |||| ||||||| |||||||||||||||| ||||||| ||||||| ||||||    
T  11513171 tcactaccacaattttaaatttcaatagcagaattttaatagagcttctagataaatactattaaaaatgcaacgcatagacatgttataacacttt 11513075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 14154195 - 14154132
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctatta 235  Q
    ||||||||||||||||||||||| ||||||  |||| ||||||||||||  ||||| |||||||    
T  14154195 tcactaccacaattttggctttttatagcagtattttaatagcgtttctacataaacgctatta 14154132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 20571462 - 20571534
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaac 245  Q
    |||||| ||||||||||||||| ||||||  |||| |||||||||| |  ||||| ||||||| ||| |||||    
T  20571462 cactactacaattttggctttttatagcagtattttaatagcgtttttacataaacgctattataaaggcaac 20571534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 316
Target Start/End: Complemental strand, 22474623 - 22474477
Alignment:
Q  170 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 269  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||   |||||||| |||||||||| |     
T  22474623 attcactaccacaattttggcttttaatagcacaattttaatagcgtttctgcataaaagctattaaaaatgtaaattatagacctattatagcactctg 22474524  T
Q  270 cagaaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    ||||||||||||| |||||||||| |||||||||  | |||||||||    
T  22474523 cagaaagcgctaaaaaaaacttgtaaaaaattgggttagatagcgct 22474477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 16729823 - 16729695
Alignment:
Q  171 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 270  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||   ||||||||||||||||||| | |    
T  16729823 ttcactaccacaattttggcttttaatagcacaattttaatagcgtttttggataaaagctattaaaaatgcaaattatagacctgttatagcactcttc 16729724  T
Q  271 agaaagcgctaagaaaaacttgttaaaaa 299  Q
    |||||||||||| |||| ||||| |||||    
T  16729723 agaaagcgctaaaaaaagcttgtgaaaaa 16729695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 33292526 - 33292415
Alignment:
Q  171 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 270  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||| | |    
T  33292526 ttcactaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagatctgttatagcactcttc 33292427  T
Q  271 agaaagcgctaa 282  Q
    ||||||||||||    
T  33292426 agaaagcgctaa 33292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 20511834 - 20511959
Alignment:
Q  174 actaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacaga 273  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||  ||||||||||||||||  ||| ||||    
T  20511834 actaacacaattttggcttttaatagcataattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagacctgttatagcggttttcaga 20511933  T
Q  274 aagcgctaagaaaaacttgttaaaaa 299  Q
    |||| ||||||||||| |||||||||    
T  20511934 aagcactaagaaaaacatgttaaaaa 20511959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 28247598 - 28247671
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaac 245  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  28247598 tcactactacaattttagcttttaatagcacaattttaatagcgtttctatataaatgctattaaaaaggcaac 28247671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 14267287 - 14267374
Alignment:
Q  176 taccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagc 263  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||  ||||| ||||||  |||  || ||||  |||||||||||||    
T  14267287 taccataattttggcttttaatagcacaattttaatagcttttctccataaaagctattgtaaagacatcccactgacctgttatagc 14267374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 32775 - 32919
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 271  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||  ||||| ||||||||||  ||| ||    
T  32775 tcactaccacaattttggcttttaatagcataattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagatctgttatagcggttttca 32874  T
Q  272 gaaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    |||||||||||||||||| ||||||||| |||  | |||||||||    
T  32875 gaaagcgctaagaaaaacatgttaaaaactgggttagatagcgct 32919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 22197913 - 22198041
Alignment:
Q  170 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 269  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| || |||||||| |||||||||||  |||| ||||||||||||||||||||||     
T  22197913 attcactaccacaattttggctttaaatagcacaattttaatagcggttatggataaacgctattaaaaa-acaacgcatagacctgttatagcactttt 22198011  T
Q  270 cagaaagcgctaagaaaaacttgttaaaaa 299  Q
     ||||||||||||||||||| |||||||||    
T  22198012 aagaaagcgctaagaaaaacatgttaaaaa 22198041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 171 - 316
Target Start/End: Complemental strand, 33737171 - 33737026
Alignment:
Q  171 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 270  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||  ||||||||||||||||||||||   |||||||| |||||||||| | |    
T  33737171 ttcactaccacaattttggcctttaatagcacaattttaatagcgtttctacataaatgctattaaaaatgcaaattatagacctattatagcactctgc 33737072  T
Q  271 agaaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    |||||||||||| |||||||||| ||||| |||  | |||||||||    
T  33737071 agaaagcgctaaaaaaaacttgtaaaaaactgggttagatagcgct 33737026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 12630289 - 12630146
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 272  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||   ||||||||||||||||||| | |||    
T  12630289 cactaccacaattttgacttttaatagcacaattttaatagcgtttttggataagtgctattaaaaatgcaaattatagacctgttatagcactcttcag 12630190  T
Q  273 aaagcgctaagaaaaacttgttaaaaattggactggatagcgct 316  Q
    |||  ||||| |||||||||| |||||||||  | |||||||||    
T  12630189 aaaatgctaaaaaaaacttgtaaaaaattgggttagatagcgct 12630146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 5562640 - 5562545
Alignment:
Q  173 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt 268  Q
    |||||| ||||||||||||||||||||| ||| || |||||||||| |  ||||| ||||||||||| ||||| || | ||||  |||||||||||    
T  5562640 cactactacaattttggcttttaatagcgcaaatttaatagcgtttttacataaacgctattaaaaaggcaacacagataccttctatagcacttt 5562545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 32718548 - 32718510
Alignment:
Q  108 cactgaatgattaatatgaaagcaaacattaaacaccga 146  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  32718548 cactcaatgattaatgtgaaagcaaacattaaacaccga 32718510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 32724953 - 32724915
Alignment:
Q  108 cactgaatgattaatatgaaagcaaacattaaacaccga 146  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  32724953 cactcaatgattaatgtgaaagcaaacattaaacaccga 32724915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 47760 - 47833
Alignment:
Q  172 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaac 245  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  47760 tcactactacaattttagcttttaatagcacaattttaatagcgtttctatataaatgctattaaaaaggcaac 47833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 2794 - 2853
Alignment:
Q  175 ctaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctatt 234  Q
    |||| |||||||| | |||||||||| |||||| ||||||||||||  ||||||||||||    
T  2794 ctactacaattttagtttttaatagcgcaattttaatagcgtttctatataaatgctatt 2853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University