View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3198_high_24 (Length: 331)
Name: NF3198_high_24
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 38281032 - 38281205
Alignment:
| Q |
39 |
tactaattttcacaccaaccaagtcatcacaaaattgcaaaatgatatttaattacaagacattgccggtggtttggatgtataaaaattagtataa--- |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38281032 |
tactaattttcacaccaaccaagtcatcacaaaattgcaaaatgatatttaattacaagacattgccggtggtttggatgtataaaaattagtataaatt |
38281131 |
T |
|
| Q |
136 |
attattaaacacacggatcataaacaaggtgttatctcatttatctatagccattgaacaagagtactatctgc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38281132 |
attattaaacacacggatcataaacaaggtgttatctcatttatctatagccattgaacaagagtactatctgc |
38281205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 38281242 - 38281310
Alignment:
| Q |
256 |
gaccaagcaagtcctatcaattgatatataaagaccatcctttatgatcttcctcatcaccctttgctt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38281242 |
gaccaagcaagtcctatcaattgatatataaagaccatcctttatgatcttcctcatcaccctttgctt |
38281310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University