View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3198_high_29 (Length: 295)

Name: NF3198_high_29
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3198_high_29
NF3198_high_29
[»] chr6 (10 HSPs)
chr6 (6-277)||(28074255-28074526)
chr6 (6-277)||(27916516-27916786)
chr6 (22-277)||(28017120-28017375)
chr6 (6-268)||(28034883-28035146)
chr6 (48-266)||(28047091-28047310)
chr6 (109-236)||(28090941-28091068)
chr6 (109-234)||(28001564-28001689)
chr6 (7-70)||(28001777-28001840)
chr6 (7-67)||(28091165-28091225)
chr6 (28-67)||(27917444-27917483)
[»] chr5 (2 HSPs)
chr5 (113-277)||(1439589-1439753)
chr5 (7-67)||(1439851-1439911)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 28074526 - 28074255
Alignment:
Q  6 gaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaagga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28074526 gaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaagga 28074427  T
Q  106 aggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28074426 aggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcct 28074327  T
Q  206 ccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28074326 ccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt 28074255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 27916786 - 27916516
Alignment:
Q  6 gaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaagga 105  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  27916786 gaaatgaagcatggagatatatatgcaatatagagaagtaatagaaaaa-tgaaacaacattttttctatcgacagaaacacaacaaggtaatggaagga 27916688  T
Q  106 aggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcct 205  Q
    ||||||||||||||||||||||||||  |||||||| |||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  27916687 aggaatgaccttatgacttgttgaacatgagggctccgcaagagttttgaaaaaagagttgtgacttcttcaatgtctttagcttcgagtgaaaatgcct 27916588  T
Q  206 ccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt 277  Q
    ||| ||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||  |||||||    
T  27916587 ccacattggttaagcaatttactgttctgtcactaattaagtcctgtccttgaatctttacttttttacctt 27916516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 28017375 - 28017120
Alignment:
Q  22 atatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatga 121  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  28017375 atatatatgcaatatagagaagttatagaaaaaatgaaacaacattttttctatcgacagaaacacaacaaggtaatggtaggaaagaatgaccttatga 28017276  T
Q  122 cttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagca 221  Q
    ||||||||||| ||||  | || |||| ||||| |||| |||||||||||||||||||  |||||||||||||| |||||||||||| || |||||||||    
T  28017275 cttgttgaacgtgaggattttgtaagagtcttgcaaaatgagttgtgacttcttcaatagctttagcgtcgagtaaaaatgcctccacatcggttaagca 28017176  T
Q  222 tcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt 277  Q
    | ||||||||||||||||| ||||| ||||| |||||||||||||||  |||||||    
T  28017175 ttttactgttctgtcactagttaagccatgtccttgaatctttacttctttacctt 28017120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 28035146 - 28034883
Alignment:
Q  6 gaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatttttt-ctattgacagaaacacatcaaggtaatggaagg 104  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||  || | || ||||| |||  |    
T  28035146 gaaatgaagaatggagatatatatgcaatgtagagaagttatagaacaaatgaaacaacatttttttctctcgacagatgcaaaacatggtaacggagtg 28035047  T
Q  105 aaggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcc 204  Q
    || ||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||    
T  28035046 aatgaatgaccttatgacttgttgaacgtgagggctccgcaagaatcttgaaaacagagttgtgacttcctcaatgtctttagcgtcgagtgaaaatgcc 28034947  T
Q  205 tccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttactt 268  Q
    |||| ||||||||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||    
T  28034946 tccacattggttaagcattttactgttctgtcactagttaagccatgtcctcgaatctttactt 28034883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 28047310 - 28047091
Alignment:
Q  48 agaaaaaatgaaacaacatttttt-ctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaa 146  Q
    |||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||    
T  28047310 agaaaaaatgaaacaacatttttttctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcgagggctccgcaa 28047211  T
Q  147 gaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagcatcttactgttctgtcactaattaag 246  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||| |||||    
T  28047210 gaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctgtcactagttaag 28047111  T
Q  247 tcatgttcttgaatctttac 266  Q
     | ||| |||||||||||||    
T  28047110 ccctgtccttgaatctttac 28047091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 28091068 - 28090941
Alignment:
Q  109 aatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcca 208  Q
    ||||||||||| |||  |||||| ||||||||| |||| |||||||  ||  ||||||||||||||||||||||||||||    ||||||||||||||||    
T  28091068 aatgaccttataactccttgaacacgagggctccgcaaaaatcttgcgaagagagttgtgacttcttcaatgtctttagcacgaagtgaaaatgcctcca 28090969  T
Q  209 aattggttaagcatcttactgttctgtc 236  Q
     |||||||||||||||||||||||||||    
T  28090968 cattggttaagcatcttactgttctgtc 28090941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 28001689 - 28001564
Alignment:
Q  109 aatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcca 208  Q
    |||||||||||||||  ||||  | |||||||| ||||||||| || |||| |||||| || |||||||||||||||| ||  |||||||||||||||||    
T  28001689 aatgaccttatgactccttgagtgtgagggctccgcaagaatcctgcaaaaagagttgcgagttcttcaatgtctttaacgcggagtgaaaatgcctcca 28001590  T
Q  209 aattggttaagcatcttactgttctg 234  Q
     ||||||||||||| |||||| ||||    
T  28001589 cattggttaagcattttactgatctg 28001564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 28001840 - 28001777
Alignment:
Q  7 aaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttt 70  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  28001840 aaatgaagcatggagatacatatgcaaggtagagaagttatagaaaaaatgaaacaatattttt 28001777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 28091225 - 28091165
Alignment:
Q  7 aaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt 67  Q
    ||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  28091225 aaatgaaacatggagatatatatgctatgtaaagaagttatagaaaaaatgaaacaacatt 28091165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 27917483 - 27917444
Alignment:
Q  28 atgcaatgtagagaagttatagaaaaaatgaaacaacatt 67  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  27917483 atgcaatgtagaaaagttatagaaaaaatgaaacaacatt 27917444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 113 - 277
Target Start/End: Complemental strand, 1439753 - 1439589
Alignment:
Q  113 accttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaatt 212  Q
    ||||||| |||  |||||| ||||||||| ||||||||||||  ||| |||| || |||||||||||||||||||||  ||||||||||||||| | |||    
T  1439753 accttataactccttgaacacgagggctccgcaagaatcttgcgaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt 1439654  T
Q  213 ggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt 277  Q
    |||||||||||||||||||||||||||| | ||  | ||| |||||| ||||||||  |||||||    
T  1439653 ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttacctt 1439589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 1439911 - 1439851
Alignment:
Q  7 aaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt 67  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1439911 aaatgaagcatggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt 1439851  T

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