View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_high_31 (Length: 281)
Name: NF3198_high_31
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 37632627 - 37632884
Alignment:
| Q |
9 |
ttattctacatgcaattcatacttcttcatttttgttgtttttctcgatgaattaaaatattaaaaactctgccgcaagcatcacaacaagatacctcta |
108 |
Q |
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| T |
37632627 |
ttattctacatgcaattcatacttctgcatttttgttgtttttctcgatgaattaaaatattaaaaactctgccgcaagcatcataacaagataactcta |
37632726 |
T |
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| Q |
109 |
cccaccttctatgaagggttggaaaaggcttccactatatgtgctcgaa-gggggacaatacaccatacaaagtcatacaccaatgacaaggcatacaaa |
207 |
Q |
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| T |
37632727 |
cccaccttctatgaagggttggaaagggcttacactatatgtgctcgaaggggggacaatacaccatacacagtcatacaccaatgacaaggcatacaaa |
37632826 |
T |
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| Q |
208 |
gataacccaaaaattgcctgccagagagtagccatacagaccaaaaacatgttgctaa |
265 |
Q |
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| T |
37632827 |
gataaccccaaaattgcctgccagagagtagccatacaaaccaaaaacatgttgctaa |
37632884 |
T |
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Back To:
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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 28697333 - 28697452
Alignment:
| Q |
147 |
atgtgctcgaagggggacaatacaccatacaaagtcatacaccaatgacaaggcatacaaagataacccaaaaattgcctgccagagagtagccatacag |
246 |
Q |
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| T |
28697333 |
atgtgttcgaaggtgtacaatagatcatacaaagacatacaccaatggcaaggcatacaaagataacaccgatattacccgccaaagagatgctatacag |
28697432 |
T |
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| Q |
247 |
accaaaaacatgttgctaat |
266 |
Q |
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| T |
28697433 |
accaaaaacaggttgctaat |
28697452 |
T |
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