View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_high_34 (Length: 269)
Name: NF3198_high_34
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_high_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 35202971 - 35202703
Alignment:
| Q |
1 |
tgcactcatgaatttctgttgcagtagtgtagagttaagtagagaagccataactggagtagtagaggccatggagttatcattagttgaagtagtagaa |
100 |
Q |
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| T |
35202971 |
tgcactcatgaatttctgttgcagtagtgtagagttaagtagagaagccataactggagtagtagaggccatggagttatcgttagttgaagtagaagaa |
35202872 |
T |
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| Q |
101 |
gaaccaaagatggaactgtagttgttattatttgaaccaaacccatttctgtaatcatcatgatgattaagattaactaccccagatgaaaaacctaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35202871 |
gaaccaaagatggaactgtagttgttattatttgaaccaaacccatttctgtaatcatcatgatgattaagattaactaccccagatgaaaaacctaatc |
35202772 |
T |
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| Q |
201 |
caagaccattcacctgaggctgctgctgctgaagatgatcataaccagaagaagaacttgaaactcttg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35202771 |
caagaccattcacctgaggctgctgctgctgaagatgatcataaccagaagaagaacttgaaactcttg |
35202703 |
T |
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