View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_high_36 (Length: 255)
Name: NF3198_high_36
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44373987 - 44373751
Alignment:
| Q |
1 |
ttcaagcatttcaaaattcataaggcattaccacaagactatgtcaatgtcatcatcatacaatatctgaattgtttgaagaagaagaaaaataaaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44373987 |
ttcaagcatttcaaaattcataaggcattaccacaagactatgtcaatgtcatcat---acaatatctgaattgtttgaagaagaagaaaaataaaaata |
44373891 |
T |
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| Q |
101 |
attactactttgctaatacgagaaaatatcgactcattgcttaacattgctattccgttctatttccatatgcagttgacgaaggaattagctggaaagc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44373890 |
attactactttgctaatacgagaaaatattgactcattgcttaacattgctattccgttctatttccatatgcagttgacgaaggaattagctggaaagc |
44373791 |
T |
|
| Q |
201 |
ccataaaagaagcacctgaagaccaaactctccctctgtg |
240 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
44373790 |
ccataaaagaagcacctgaagaccaaactcttcctctgtg |
44373751 |
T |
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