View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_high_44 (Length: 237)
Name: NF3198_high_44
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 38280789 - 38280720
Alignment:
| Q |
123 |
gtacaatgataaaagtggggatgtgtatttattggcaataaataaatgggtattttgtcttttgtattta |
192 |
Q |
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| T |
38280789 |
gtacaatgataaaagtggggatgtgtatttattggcaataaataaatgggtattttgtcttttgtattta |
38280720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38280907 - 38280866
Alignment:
| Q |
1 |
tagttttgtcttttgtgtatatactctatttttagtacaatg |
42 |
Q |
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| T |
38280907 |
tagttttgtcttttgtgtatatactctatttttagtacaatg |
38280866 |
T |
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