View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3198_high_45 (Length: 237)
Name: NF3198_high_45
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_high_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3982968 - 3983189
Alignment:
| Q |
1 |
tcttagttttgataacatttattctgacatggatttttctatccagggcattaataaagaattgtgaattgggtttctctgtctcaatgcatttgatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
3982968 |
tcttagttttgataacatttattctgacatggatttttctatccagggcattaataaagaatt-tgaattgggtttctctgtctcagtgcatttgttttt |
3983066 |
T |
|
| Q |
101 |
gcaagttctgcacttgaataagcaatcacaagggttgttggacatgttaaaatcatttaagtaaatgatgatgacaactagaaaaattgtgaaactgcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3983067 |
gcaagttctgcacttgaataagcaatcacatgggttgttggatatgttaaaatcatttaagtaaatgatgatgacaactagaaaaattgtgaaactgcca |
3983166 |
T |
|
| Q |
201 |
tagaaaaattgaattgtgaaatg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3983167 |
tagaaaaattgaattgtgaaatg |
3983189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University