View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3198_high_52 (Length: 216)

Name: NF3198_high_52
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3198_high_52
NF3198_high_52
[»] chr8 (2 HSPs)
chr8 (1-185)||(295394-295578)
chr8 (152-185)||(26871046-26871079)
[»] scaffold0155 (1 HSPs)
scaffold0155 (147-185)||(3298-3336)
[»] chr7 (1 HSPs)
chr7 (151-185)||(21752657-21752691)
[»] chr6 (1 HSPs)
chr6 (151-185)||(16337108-16337142)
[»] chr4 (3 HSPs)
chr4 (151-185)||(17363229-17363263)
chr4 (151-185)||(51296227-51296261)
chr4 (152-185)||(29384235-29384268)
[»] chr3 (3 HSPs)
chr3 (142-180)||(22153854-22153892)
chr3 (151-180)||(52727491-52727520)
chr3 (149-185)||(43900795-43900831)
[»] chr2 (3 HSPs)
chr2 (151-185)||(42665850-42665884)
chr2 (143-180)||(41353540-41353577)
chr2 (151-179)||(42251964-42251992)
[»] chr5 (1 HSPs)
chr5 (151-180)||(27340868-27340897)
[»] chr1 (2 HSPs)
chr1 (149-178)||(586896-586925)
chr1 (152-185)||(37690429-37690462)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 295394 - 295578
Alignment:
Q  1 tgttttattttatctctctttgcttggtccaaaattaaggcatcaaccttagccagatatatacatacatacttgcatcgtacatatttttccctcctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  295394 tgttttattttatctctctttgcttggtccaaaattaaggcatcaaccttagccagatataaacatacatacttgcatcgtacatattttcccctcctta 295493  T
Q  101 tacttggatgaataaatattaggctaaattaaatcagggtcttttgaaagagagaaatgatatttgtacaatcactttatcacaa 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||    
T  295494 tacttggatgaataaatattaggctaaattaaatcagggtcttttaaaagtgagaaatgatatttgtacaaccactttatcacaa 295578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 26871046 - 26871079
Alignment:
Q  152 gagaaatgatatttgtacaatcactttatcacaa 185  Q
    ||||||||||||||||||||||||||||| ||||    
T  26871046 gagaaatgatatttgtacaatcactttatgacaa 26871079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 3336 - 3298
Alignment:
Q  147 aaagagagaaatgatatttgtacaatcactttatcacaa 185  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  3336 aaagagagaaatgatatttgtacaaccactttctcacaa 3298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 21752657 - 21752691
Alignment:
Q  151 agagaaatgatatttgtacaatcactttatcacaa 185  Q
    |||||||||||||||||||||||||||| ||||||    
T  21752657 agagaaatgatatttgtacaatcactttctcacaa 21752691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 16337142 - 16337108
Alignment:
Q  151 agagaaatgatatttgtacaatcactttatcacaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  16337142 agagaaatgatatttgtacaatcactttatgacaa 16337108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 17363229 - 17363263
Alignment:
Q  151 agagaaatgatatttgtacaatcactttatcacaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  17363229 agagaaatgatatttgtacaatcactttattacaa 17363263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 51296261 - 51296227
Alignment:
Q  151 agagaaatgatatttgtacaatcactttatcacaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  51296261 agagaaatgatatttgtacaatcactttatgacaa 51296227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 29384268 - 29384235
Alignment:
Q  152 gagaaatgatatttgtacaatcactttatcacaa 185  Q
    ||||||||||||||||||||||||||||| ||||    
T  29384268 gagaaatgatatttgtacaatcactttatgacaa 29384235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 22153854 - 22153892
Alignment:
Q  142 ttttgaaagagagaaatgatatttgtacaatcactttat 180  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  22153854 ttttgaaattgagaaatgatatttgtacaatcactttat 22153892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 180
Target Start/End: Complemental strand, 52727520 - 52727491
Alignment:
Q  151 agagaaatgatatttgtacaatcactttat 180  Q
    ||||||||||||||||||||||||||||||    
T  52727520 agagaaatgatatttgtacaatcactttat 52727491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 43900831 - 43900795
Alignment:
Q  149 agagagaaatgatatttgtacaatcactttatcacaa 185  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  43900831 agagagaaatgatatttgtacaaccactttattacaa 43900795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 42665884 - 42665850
Alignment:
Q  151 agagaaatgatatttgtacaatcactttatcacaa 185  Q
    |||||||||||||||||||||||||||||| ||||    
T  42665884 agagaaatgatatttgtacaatcactttattacaa 42665850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 41353577 - 41353540
Alignment:
Q  143 tttgaaagagagaaatgatatttgtacaatcactttat 180  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41353577 tttgaaaaagagaaatgatatttgtacaatcaatttat 41353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 179
Target Start/End: Complemental strand, 42251992 - 42251964
Alignment:
Q  151 agagaaatgatatttgtacaatcacttta 179  Q
    |||||||||||||||||||||||||||||    
T  42251992 agagaaatgatatttgtacaatcacttta 42251964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 180
Target Start/End: Original strand, 27340868 - 27340897
Alignment:
Q  151 agagaaatgatatttgtacaatcactttat 180  Q
    ||||||||||||||||||||||||||||||    
T  27340868 agagaaatgatatttgtacaatcactttat 27340897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 586896 - 586925
Alignment:
Q  149 agagagaaatgatatttgtacaatcacttt 178  Q
    ||||||||||||||||||||||||||||||    
T  586896 agagagaaatgatatttgtacaatcacttt 586925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 37690429 - 37690462
Alignment:
Q  152 gagaaatgatatttgtacaatcactttatcacaa 185  Q
    ||||||||||||||||||||||||||||| ||||    
T  37690429 gagaaatgatatttgtacaatcactttatgacaa 37690462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University