View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_high_9 (Length: 470)
Name: NF3198_high_9
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 22 - 460
Target Start/End: Complemental strand, 45659264 - 45658825
Alignment:
| Q |
22 |
taaaaatatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactacatcaaaaaacaagaacatattttgcatcaaa- |
120 |
Q |
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| T |
45659264 |
taaaaatatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactacatcaaaaaacaagaacatagtttgcatcaaaa |
45659165 |
T |
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| Q |
121 |
ttcaaatcagcaaaaaacagaaccaacaaagagtttttgtttatacttcagcttaccaaaaataaacatagaagccctgaatccacctttctttctcttc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45659164 |
ttcaaatcagcaaaaaacagaaccaacaaagagtttttgtttatacttcagcttaccaaaaataaacatagaagccctaaatccacctttctttctcttc |
45659065 |
T |
|
| Q |
221 |
cattcagtgagaagcttgagttcttcagtttcctcttgatctgcctgtattacaaagatttgaaactcatcaactatatgtatatagaaacaagctaagg |
320 |
Q |
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| T |
45659064 |
cattcagtgagaagcttgagttcttcagtttcctcttgatctgcctgtattacaaagatttgaaactcatcaactatatgtatatagaaacaagctaagg |
45658965 |
T |
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| Q |
321 |
ttagaaaaatgagtgagatgaatgagtagaaccttaccattgtctcgataatgagagttaagttttagacaagaatagtaaagttcaaatgaaatggtgt |
420 |
Q |
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| T |
45658964 |
ttagaaaaatgagtgagatgaatgagtagaaccttaccattgtctcgataatgagagttaagttttagacaagaatagtaaagttcaaatgaaatggtgt |
45658865 |
T |
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| Q |
421 |
ttgtgaagaaatagctcaaaattgtttgcctctgtctgtg |
460 |
Q |
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| T |
45658864 |
ttgtgaagaaatagctcaaaattgtttgcctctgtctgtg |
45658825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 37984283 - 37984345
Alignment:
| Q |
28 |
tatagaactaagctaaccatgtttgccacaaaacccatgttgtccaatgctgacaatactaca |
90 |
Q |
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| T |
37984283 |
tatagtactaagctcaccatgtttgtcacaaaacccatgttatccaatgctgacaaaactaca |
37984345 |
T |
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