View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_10 (Length: 441)
Name: NF3198_low_10
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 45981999 - 45981593
Alignment:
| Q |
20 |
gatgatccaccaactggtaaaatcactttcaaaacaccttctggactttttagaagtttccctgtttctgcttttgaaattgaagaagagaaatcaagtg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45981999 |
gatgatccaccaactggtaaaatcactttcaaaacaccttctggactttttagaagtttccctgtttctgcttttgaaattgaagaagagaaatcaagtg |
45981900 |
T |
|
| Q |
120 |
gtgttgctgttaaggaagttgctgctaacaaggtcaatgaaactgttgctgctgctgctggtgtcaaagaggtctaagtctattgatttnnnnnnnnnnn |
219 |
Q |
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| T |
45981899 |
gtgttgctgttaaggaagttgctgctaacaaggtcaatgaaactgttgctgctgctgctggtgtcaaagaggtctaagtctattgattt---atgatgat |
45981803 |
T |
|
| Q |
220 |
nnnnnnntggttgctgctgctattaaaatttcaattaattattaataagttgatggattatgttaccattttctagattatttatgtagggcagtttcaa |
319 |
Q |
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| T |
45981802 |
gatgatgtggttgctgctgctattaaaatttcaattaattattaataagttgatggattatgttactattttctagattatttatgtagggcagtttcaa |
45981703 |
T |
|
| Q |
320 |
atcttagctgtgctatttgaagtgcagtataaaacatcctctattgttcttttttccattattataaatgaaatgaaatgaaatgaattttatagtattt |
419 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45981702 |
atcttagctgtgctatttgaagtgcagtattaaacatcctctattgttcttttttccattattat-----aaatgaaatgaaatgaattttatagtattt |
45981608 |
T |
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| Q |
420 |
attgttcctttgctt |
434 |
Q |
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| T |
45981607 |
attgttcctttgctt |
45981593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 41716584 - 41716496
Alignment:
| Q |
20 |
gatgatccaccaactggtaaaatcactttcaaaacaccttctggactttttagaagtttccctgtttctgcttttgaaattgaagaaga |
108 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||| || ||||||||||||||| |||| ||||| |
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| T |
41716584 |
gatgatccaccaactggtaaaatcactttcaaagctacttctggactttctagaacttttccagtttctgcttttgaagttgaggaaga |
41716496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 37614673 - 37614761
Alignment:
| Q |
20 |
gatgatccaccaactggtaaaatcactttcaaaacaccttctggactttttagaagtttccctgtttctgcttttgaaattgaagaaga |
108 |
Q |
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||||||||||||||||||||||||||||||| | | |||||||||| |||| |||||||| || |||||||| || |||||||| |
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| T |
37614673 |
gatgatccaccaactggtaaaatcactttcagggccattactggacttttcagaactttccctgcctcagcttttgagatagaagaaga |
37614761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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