View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_12 (Length: 438)
Name: NF3198_low_12
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 51766196 - 51766507
Alignment:
| Q |
18 |
atcttaaagctttcttgtaattgaagaaacccataaaccagaagtcgaaaccatccacagtgactatttctatgtatttttctgacggtttcttcatatt |
117 |
Q |
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| T |
51766196 |
atcttaaagctttcttgtaattgaagaaacccataaaccagaagtcgaaaccatccacagtgactatttctatgtatttttctgacggtttcatcatatt |
51766295 |
T |
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| Q |
118 |
ttgactttggttgacttgttgtatcttttcatgtggaatagagaccttatagtgaactctaatcaattctccattcgaggaagaaattttgatggatttg |
217 |
Q |
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| T |
51766296 |
ttgactttggttgacttgttgtatcttttcaagtggaatagagaccttatagtgaactctaatcaattctccattcgaggaagaaattttgatggatttg |
51766395 |
T |
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| Q |
218 |
tcactacagaaagcaattttgtgagtggaaatgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttct |
317 |
Q |
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| T |
51766396 |
tcactacagaaagcaattttgtgagtggaaatgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttct |
51766495 |
T |
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| Q |
318 |
ccccgtcgtttg |
329 |
Q |
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| T |
51766496 |
ccccgtcgtttg |
51766507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 161 - 422
Target Start/End: Original strand, 51753572 - 51753833
Alignment:
| Q |
161 |
accttatagtgaactctaatcaattctccattcgaggaagaaattttgatggatttgtcactacagaaagcaattttgtgagtggaaatgaagaggaggc |
260 |
Q |
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| T |
51753572 |
accttatagcgaactctactcaattctccttttggtgaagagatcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggc |
51753671 |
T |
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| Q |
261 |
cagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttgcattaaaaagttgcataaatactttctctac |
360 |
Q |
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| T |
51753672 |
ctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctac |
51753771 |
T |
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| Q |
361 |
tccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatct |
422 |
Q |
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| T |
51753772 |
tccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatct |
51753833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 51753314 - 51753460
Alignment:
| Q |
18 |
atcttaaagctttcttgtaattgaagaaacccataaaccagaagtcgaaaccatccacagtgactatttctatgtatttttctgacggtttcttcatatt |
117 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| ||| |
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| T |
51753314 |
atcttaaagctttccgataattaaagaaacccataaaccagaagtcgaaaccatctacggtgactatttctatgtatttttctgaaggtttcttcacatt |
51753413 |
T |
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| Q |
118 |
ttgactttggttgacttgttgtatcttttcatgtggaatagagacct |
164 |
Q |
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| T |
51753414 |
ttgactttggttgacatgctgaatcttttcatgtggaatagatacct |
51753460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 420
Target Start/End: Original strand, 12196124 - 12196347
Alignment:
| Q |
197 |
gaagaaattttgatggatttgtcactacagaaagcaattttgtgagtggaaatgaagaggaggccagctataagacctgatgtggttgataggtaacact |
296 |
Q |
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||||| ||||| || ||| | |||||||| || |||||||| | ||| || |||||||| ||||| |||| | |||| ||||| |||||||| ||||| | |
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| T |
12196124 |
gaagagattttaattgatctctcactacaaaaggcaattttattagttgatatgaagagtaggcctgctagaggaccagatgttgttgatagataacatt |
12196223 |
T |
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| Q |
297 |
gagatgctttcaacagcttctccccgtcgtttgcattaaaaagttgcataaatactttctctactccgccaacctgaagaattctggctcccaacctcaa |
396 |
Q |
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| T |
12196224 |
gagatgcttttagtagcctctctccatcttttacactaaatagttgcatgaacaccttttccactcctccaacttgaagaattctagctcctaagctcag |
12196323 |
T |
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| Q |
397 |
tttcccttttactgtatctgttat |
420 |
Q |
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|| ||||| |||||||| ||||| |
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| T |
12196324 |
ctttcctttcactgtatcggttat |
12196347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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