View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3198_low_13 (Length: 410)

Name: NF3198_low_13
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3198_low_13
NF3198_low_13
[»] chr5 (12 HSPs)
chr5 (11-394)||(30048294-30048677)
chr5 (212-393)||(16596473-16596654)
chr5 (16-174)||(16597894-16598047)
chr5 (11-170)||(10275516-10275674)
chr5 (82-188)||(12019839-12019945)
chr5 (82-188)||(37659777-37659883)
chr5 (276-395)||(15065620-15065739)
chr5 (82-188)||(7102875-7102981)
chr5 (82-188)||(16795219-16795325)
chr5 (82-188)||(30696346-30696452)
chr5 (82-188)||(40370748-40370854)
chr5 (79-167)||(15065838-15065926)
[»] chr3 (5 HSPs)
chr3 (28-391)||(22930616-22930968)
chr3 (11-175)||(9698560-9698724)
chr3 (11-202)||(43548694-43548885)
chr3 (82-170)||(21848178-21848266)
chr3 (82-188)||(54170845-54170951)
[»] chr4 (5 HSPs)
chr4 (11-175)||(27187118-27187282)
chr4 (11-193)||(31355658-31355840)
chr4 (80-188)||(43682681-43682789)
chr4 (82-188)||(44148108-44148214)
chr4 (9-53)||(25171115-25171159)
[»] chr2 (6 HSPs)
chr2 (11-168)||(13270049-13270206)
chr2 (92-176)||(42515385-42515469)
chr2 (82-188)||(8051942-8052048)
chr2 (82-188)||(36671601-36671707)
chr2 (13-170)||(17256261-17256418)
chr2 (318-362)||(13269872-13269916)
[»] chr8 (10 HSPs)
chr8 (11-170)||(1287806-1287965)
chr8 (275-395)||(17784920-17785040)
chr8 (82-188)||(201185-201291)
chr8 (82-188)||(316022-316128)
chr8 (82-188)||(30409304-30409410)
chr8 (82-188)||(43810984-43811090)
chr8 (82-188)||(28647461-28647567)
chr8 (82-188)||(41946366-41946472)
chr8 (289-382)||(41946556-41946649)
chr8 (318-382)||(28647680-28647744)
[»] scaffold0044 (1 HSPs)
scaffold0044 (82-188)||(48366-48472)
[»] chr7 (2 HSPs)
chr7 (82-188)||(27757947-27758053)
chr7 (82-188)||(7943584-7943690)
[»] chr6 (8 HSPs)
chr6 (82-188)||(8319005-8319111)
chr6 (82-188)||(17880980-17881086)
chr6 (82-188)||(27571233-27571339)
chr6 (82-184)||(17160643-17160745)
chr6 (11-188)||(21414100-21414277)
chr6 (91-164)||(23254611-23254684)
chr6 (275-395)||(23254770-23254890)
chr6 (289-382)||(27571056-27571149)
[»] chr1 (2 HSPs)
chr1 (82-188)||(26312563-26312669)
chr1 (82-188)||(39794945-39795051)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 30048294 - 30048677
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048294 caaaggatgtgaaaactttgaaaattgaagaaatgcagagttcattggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 30048393  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaactctaagggcgaaactggtcaaattctaaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048394 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaactctaagggcgaaactggtcaaattctaaag 30048493  T
Q  211 agaagaacaaagccagtgataaaactgaatcttcaaaaggaggaggttatggtaattatcaaggcaagaagaaaggctttgataagaagaagatatgttg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048494 agaagaacaaagccagtgataaaactgaatcttcaaaaggaggaggttctggtaattatcaaggcaagaagaaaggctttgataagaagaagatatgttg 30048593  T
Q  311 ttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaagc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30048594 ttataattgtgaaaagtttggtcattatgcttctgaatgttggaccggtaaacggaagcaagtaaagaatgaagaggaacaagc 30048677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 393
Target Start/End: Complemental strand, 16596654 - 16596473
Alignment:
Q  212 gaagaacaaagccagtgataaaactgaatcttcaaaaggaggaggttatggtaattatcaaggcaagaagaaaggctttgataagaagaagatatgttgt 311  Q
    |||||| ||||| || || ||| |||||||||||||||||||||| | ||| ||||| |||||||| ||||  || ||||||||||||||| ||   |||    
T  16596654 gaagaagaaagctagcgacaaagctgaatcttcaaaaggaggaggctttggaaattaccaaggcaaaaagaggggttttgataagaagaaggtacaatgt 16596555  T
Q  312 tataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaacaag 393  Q
    |||||||| ||||  |||||||||||||||||||| ||||||||||||||| ||||||||  |||||| |||||||||||||    
T  16596554 tataattgagaaatatttggtcattatgcttctgagtgttggactggtaaaaggaagcaatcaaagaaagaagaggaacaag 16596473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 16598047 - 16597894
Alignment:
Q  16 gatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaacaagctt 115  Q
    |||||| |||||||||| ||| ||||| || ||||||||||||| |||| |||||| ||       |||||||| |||||||||| ||||||||||||||    
T  16598047 gatgtgaaaactttgaagattcaagaactgaagagttctttggaagcacatgaattgatgg-----gaaagaagcagtgaaagataaattcaacaagctt 16597953  T
Q  116 tacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaa 174  Q
    | |||||||||||||||||||| ||||  |||||||| |||||||||||||||||||||    
T  16597952 tgcaagttcaaactgtgaagaaagatggttatgataagaagaatttcaagaaaggcaaa 16597894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 10275516 - 10275674
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    ||||||||||| | || ||||| ||||| ||| |||||||||| ||||| |||| |||||| ||  |  |||||||||| ||| ||||||||||||||||    
T  10275516 caaaggatgtgaagacattgaagattgaggaattgcagagttcattggaagcacatgaattgatggtaactgaaagaagcagt-aaagatcaattcaaca 10275614  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaagg 170  Q
    |||  |||||||||||||| | |||||||||||  |||||| ||| || |||||||||||    
T  10275615 agccctacaagttcaaactatcaagaaggatgataatgatagaaataacttcaagaaagg 10275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 12019839 - 12019945
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | ||||||||||||||||||||| || |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  12019839 gaaagaagcaatgaaagatcaattcaacaagccttgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaaggaaagaaaaact 12019938  T
Q  182 ctaaggg 188  Q
    |||||||    
T  12019939 ctaaggg 12019945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 37659777 - 37659883
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | ||||||||||||||||||||| || |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  37659777 gaaagaagcaatgaaagatcaattcaacaagccttgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaaggaaagaaaaact 37659876  T
Q  182 ctaaggg 188  Q
    |||||||    
T  37659877 ctaaggg 37659883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 395
Target Start/End: Complemental strand, 15065739 - 15065620
Alignment:
Q  276 aagaagaaaggctttgataagaagaagatatgttgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaa 375  Q
    ||||||||||  |||||||||||||||||    |||| ||| |||||||| |||| ||| | |||||| ||||||||| |||||||| | ||||||| ||    
T  15065739 aagaagaaagattttgataagaagaagattcaatgttttaaatgtgaaaattttgatcactttgcttccgaatgttggtctggtaaaggaaagcaagcaa 15065640  T
Q  376 agaatgaagaggaacaagct 395  Q
    ||||||| ||||||||||||    
T  15065639 agaatgatgaggaacaagct 15065620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 7102981 - 7102875
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  7102981 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 7102882  T
Q  182 ctaaggg 188  Q
    |||||||    
T  7102881 ctaaggg 7102875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 16795219 - 16795325
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  16795219 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 16795318  T
Q  182 ctaaggg 188  Q
    |||||||    
T  16795319 ctaaggg 16795325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 30696346 - 30696452
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||| ||||||  | |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  30696346 gaaagaagcaatgaaagatcaattcgacaagccctgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 30696445  T
Q  182 ctaaggg 188  Q
    |||||||    
T  30696446 ctaaggg 30696452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 40370854 - 40370748
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | ||||| |||||||||||||||  | |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  40370854 gaaagaagcaatgaaaaatcaattcaacaagccctgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 40370755  T
Q  182 ctaaggg 188  Q
    |||||||    
T  40370754 ctaaggg 40370748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 15065926 - 15065838
Alignment:
Q  79 tctgaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaa 167  Q
    ||||| ||||| ||||||| || |||||||||||| || |||||||| ||  ||||||| ||||| | |||||||||||| ||||||||    
T  15065926 tctgagagaagcagtgaaatatgaattcaacaagccttgcaagttcagaccatgaagaaagatgattctgataaaaagaacttcaagaa 15065838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 391
Target Start/End: Complemental strand, 22930968 - 22930616
Alignment:
Q  28 ttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaa 127  Q
    ||||| ||||||||| |||| |||||||||||||||| |||||| ||  ||| |||||||||||||||||||||||||||||||   || ||||||||||    
T  22930968 ttgaagattgaagaattgcatagttctttggaggcacatgaattgatggtgtatgaaagaagtagtgaaagatcaattcaacaacaattgcaagttcaaa 22930869  T
Q  128 ctgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaactctaaggg-cgaaactggtcaaattctaaagagaagaacaaagccag 226  Q
    || | || |  ||||| | || ||| ||||| |||||||||||||| | |||||| |||||  |||||||||||      |||  ||||||||||| ||     
T  22930868 ctattaatagagatgattttgttaagaagaacttcaagaaaggcaagaataactccaagggaggaaactggtca------aaatggaagaacaaagtcat 22930775  T
Q  227 tgataaaactgaatcttcaaaaggaggaggttatggtaattatcaaggcaagaagaaaggctttgataagaagaagatatgttgttataattgtgaaaag 326  Q
    ||| ||   ||||| |||||||||| || |||       |||||||  |||||||||| | ||| |||||||||||   |  || |||||||||||||||    
T  22930774 tgaaaatggtgaatgttcaaaaggatgaagtt------tttatcaaaacaagaagaaatgttttcataagaagaaggattaatgctataattgtgaaaag 22930681  T
Q  327 tttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatgaagaggaaca 391  Q
    ||||  |  ||||| ||||||||  || |||||||| ||||| ||||||||||||||||||||||    
T  22930680 tttgccctctatgcatctgaatgccggtctggtaaagggaagaaagtaaagaatgaagaggaaca 22930616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 9698560 - 9698724
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    ||||||||||| | || ||||| ||||| ||| |||||||||| ||||| |||| |||||| ||  |  |||||||||| |||||||||||||||||| |    
T  9698560 caaaggatgtgaagacattgaagattgaggaattgcagagttcattggaagcacatgaattgatggtaactgaaagaagcagtgaaagatcaattcaaaa 9698659  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaa 175  Q
    |||  |||||||||||||| | |||||||||||  ||||||  ||||| ||||||||||| ||||    
T  9698660 agccctacaagttcaaactatcaagaaggatgataatgataggaagaacttcaagaaagggaaaa 9698724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 43548694 - 43548885
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    ||||||||||| | || ||||| ||||| ||| ||||| |||| || || |||| |||||  ||  |  |||||||||| ||||||||||||||||||||    
T  43548694 caaaggatgtgaagacattgaagattgaggaattgcagtgttcattagaagcacatgaatcgatggtaactgaaagaagcagtgaaagatcaattcaaca 43548793  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaactctaagggcgaaactggtcaaa 202  Q
    |||  || ||||||||||| | |||||||||||  ||||||  ||||| ||||||||||| || |  || |||||||  |||||||||||||    
T  43548794 agccctaaaagttcaaactatcaagaaggatgataatgataggaagaacttcaagaaagggaagaaaaattctaaggaggaaactggtcaaa 43548885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 21848178 - 21848266
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaagg 170  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | ||||||||||| |||||||| ||||| |||||||||||    
T  21848178 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaagaaggatgattatgataagaagaacttcaagaaagg 21848266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 54170951 - 54170845
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  54170951 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 54170852  T
Q  182 ctaaggg 188  Q
    |||||||    
T  54170851 ctaaggg 54170845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 27187118 - 27187282
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    ||||||||||| | || ||||| ||||| ||| |||||||||| ||||| |||| |||||| ||  |  |||||||||| |||||||||||||||||| |    
T  27187118 caaaggatgtgaagacattgaagattgaggaattgcagagttcattggaagcacatgaattgatggtaactgaaagaagcagtgaaagatcaattcaaaa 27187217  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaa 175  Q
    |||  |||||||||||||| | |||||||||||  ||||||  ||||| ||||||||||| ||||    
T  27187218 agccctacaagttcaaactatcaagaaggatgataatgataggaagaacttcaagaaagggaaaa 27187282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 31355658 - 31355840
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    ||||||||||| | || ||||| ||||||||| |||||||||| ||||| |||| |||||| ||  |  |||||| ||| ||||||||||||||||||||    
T  31355658 caaaggatgtgaagacattgaagattgaagaattgcagagttcattggaagcacatgaattgatggtaactgaaacaagaagtgaaagatcaattcaaca 31355757  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaactctaagggcgaaa 193  Q
    |||  |||||||||||||| | |||||| ||||  ||||||  ||||| ||||||||| | || |  ||||||||||| ||||    
T  31355758 agccctacaagttcaaactatcaagaagtatgataatgataggaagaacttcaagaaaaggaagaaaaactctaagggggaaa 31355840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 43682789 - 43682681
Alignment:
Q  80 ctgaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaa 179  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||||| | |||||||||||  ||||||  ||||| || |||||||| || |  ||    
T  43682789 ctgaaagaagcagtgaaagatcaattcaacaagccctacaagttcaaactatcaagaaggatgataatgataggaagaacttaaagaaagggaagaaaaa 43682690  T
Q  180 ctctaaggg 188  Q
    |||||||||    
T  43682689 ctctaaggg 43682681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 44148108 - 44148214
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  44148108 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 44148207  T
Q  182 ctaaggg 188  Q
    |||||||    
T  44148208 ctaaggg 44148214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 25171115 - 25171159
Alignment:
Q  9 agcaaaggatgtgcaaactttgaaaattgaagaaatgcagagttc 53  Q
    ||||||||||||| ||||| |||| ||||||||| ||||||||||    
T  25171115 agcaaaggatgtgaaaactatgaagattgaagaattgcagagttc 25171159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 13270206 - 13270049
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    |||| |||||| | || ||||| ||||||||| |||||||||| || || |||| |||||| ||  |  |||||||||| ||||||||||||||||||||    
T  13270206 caaaagatgtgaagacattgaagattgaagaattgcagagttcattagaagcacatgaattgatggtaactgaaagaagcagtgaaagatcaattcaaca 13270107  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaa 168  Q
    |||  |||||||||||||| | |||||||||||  ||||||  || || |||||||||    
T  13270106 agccctacaagttcaaactatcaagaaggatgataatgataggaataacttcaagaaa 13270049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 42515385 - 42515469
Alignment:
Q  92 gtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaag 176  Q
    ||||||||||||||||||||||  |||||||||||||| | |||||||||||  ||||||  ||||| ||||||||||| |||||    
T  42515385 gtgaaagatcaattcaacaagccctacaagttcaaactatcaagaaggatgataatgataggaagaacttcaagaaaggaaaaag 42515469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 8051942 - 8052048
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  8051942 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 8052041  T
Q  182 ctaaggg 188  Q
    |||||||    
T  8052042 ctaaggg 8052048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 36671601 - 36671707
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  36671601 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 36671700  T
Q  182 ctaaggg 188  Q
    |||||||    
T  36671701 ctaaggg 36671707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 17256261 - 17256418
Alignment:
Q  13 aaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaacaag 112  Q
    ||||||||| |||| ||||| |||| |||| |||| |||||  |||| || | |||||| ||  | ||||| |||||   ||||||||||||||||||||    
T  17256261 aaggatgtgaaaaccttgaagattgtagaattgcaaagttcactggaagctcatgaattgatggtttctgagagaagcgatgaaagatcaattcaacaag 17256360  T
Q  113 ctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaagg 170  Q
     ||| |||||||||||| | |  |||||||| |||||||  ||||| |||||||||||    
T  17256361 ttttgcaagttcaaactatcagaaaggatgattatgataggaagaacttcaagaaagg 17256418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 13269916 - 13269872
Alignment:
Q  318 tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaa 362  Q
    |||||||| ||||| ||||||||||| ||||||||| ||||||||    
T  13269916 tgtgaaaaatttggacattatgcttcagaatgttggtctggtaaa 13269872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 1287806 - 1287965
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    ||||||||||| | || ||||| ||||| ||| |||||||||| || || |||| |||||| ||  |  |||||||||| ||||||||||||||| ||||    
T  1287806 caaaggatgtgaagacattgaagattgaggaattgcagagttcattagaagcacatgaattgatggtaactgaaagaagcagtgaaagatcaatttaaca 1287905  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaagg 170  Q
    |||  ||||| |||||||| | |||||||||||  ||||||  ||||| |||||||||||    
T  1287906 agccctacaaattcaaactatcaagaaggatgataatgataggaagaacttcaagaaagg 1287965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 395
Target Start/End: Complemental strand, 17785040 - 17784920
Alignment:
Q  275 caagaagaaaggctttgataagaagaagatatgttgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagta 374  Q
    |||||||||||| |||||||||||||||||  | |||| ||| ||||| || |||||||| | ||||||| |||| ||| |||||||| | |||||||||    
T  17785040 caagaagaaaggttttgataagaagaagattcggtgttttaaatgtgagaattttggtcactttgcttctaaatgctggtctggtaaaggaaagcaagta 17784941  T
Q  375 aagaatgaagaggaacaagct 395  Q
    ||||| || ||| ||||||||    
T  17784940 aagaaagatgagcaacaagct 17784920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 201291 - 201185
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  201291 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 201192  T
Q  182 ctaaggg 188  Q
    |||||||    
T  201191 ctaaggg 201185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 316128 - 316022
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  316128 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 316029  T
Q  182 ctaaggg 188  Q
    |||||||    
T  316028 ctaaggg 316022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 30409410 - 30409304
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  30409410 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 30409311  T
Q  182 ctaaggg 188  Q
    |||||||    
T  30409310 ctaaggg 30409304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 43811090 - 43810984
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  43811090 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgatatgaagaacttcaagaaagggaagaaaaact 43810991  T
Q  182 ctaaggg 188  Q
    |||||||    
T  43810990 ctaaggg 43810984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 28647461 - 28647567
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || || ||||| |||||||  ||||| ||||||||||| || |  ||||    
T  28647461 gaaagaagcaatgaaagatcaattcaacaagccatgcaagttcaaactatcaaaaaagatgattatgataggaagaacttcaagaaagggaagaaaaact 28647560  T
Q  182 ctaaggg 188  Q
    |||||||    
T  28647561 ctaaggg 28647567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 41946366 - 41946472
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | ||||||||||| | |||||   |||| || |||||||| || |  ||||    
T  41946366 gaaagaagcattgaaagatcaattcaacaagccctgcaagttcaaactatcaagaaggatgattgtgatagggagaactttaagaaagggaagaaaaact 41946465  T
Q  182 ctaaggg 188  Q
    |||||||    
T  41946466 ctaaggg 41946472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 382
Target Start/End: Original strand, 41946556 - 41946649
Alignment:
Q  289 ttgataagaagaagatatgttgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatga 382  Q
    ||||||||||||||||    ||||  || ||||| || ||||| |||||||| |||||||||||| |||||||| | ||||||  |||||||||    
T  41946556 ttgataagaagaagattcagtgtttcaaatgtgagaaatttggacattatgcctctgaatgttggtctggtaaaggaaagcaatcaaagaatga 41946649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 28647680 - 28647744
Alignment:
Q  318 tgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatga 382  Q
    ||||| || ||||| |||||||| |||||||||||| |||||||| | ||||||  |||||||||    
T  28647680 tgtgagaaatttggacattatgcctctgaatgttggtctggtaaaggaaagcaatcaaagaatga 28647744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 48472 - 48366
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | ||||||||||||||||||||| || |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  48472 gaaagaagcaatgaaagatcaattcaacaagccttgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaaggaaagaaaaact 48373  T
Q  182 ctaaggg 188  Q
    |||||||    
T  48372 ctaaggg 48366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 27757947 - 27758053
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  27757947 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 27758046  T
Q  182 ctaaggg 188  Q
    |||||||    
T  27758047 ctaaggg 27758053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 7943690 - 7943584
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  7943690 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 7943591  T
Q  182 ctaaggg 188  Q
    |||||||    
T  7943590 ctaaggg 7943584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 8319111 - 8319005
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  8319111 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 8319012  T
Q  182 ctaaggg 188  Q
    |||||||    
T  8319011 ctaaggg 8319005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 17881086 - 17880980
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  17881086 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 17880987  T
Q  182 ctaaggg 188  Q
    |||||||    
T  17880986 ctaaggg 17880980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 27571339 - 27571233
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | ||||||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  27571339 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaagaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 27571240  T
Q  182 ctaaggg 188  Q
    |||||||    
T  27571239 ctaaggg 27571233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 17160643 - 17160745
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| ||||||||||||||||||||||| ||  ||||||||||| | ||||||||||| |||||||  || |  ||||||||||| || | |||||    
T  17160643 gaaagaagcagtgaaagatcaattcaacaagccttgaaagttcaaactatcaagaaggatgattatgataggaaaatattcaagaaagggaagaataact 17160742  T
Q  182 cta 184  Q
    |||    
T  17160743 cta 17160745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 21414277 - 21414100
Alignment:
Q  11 caaaggatgtgcaaactttgaaaattgaagaaatgcagagttctttggaggcacgtgaattaataatgtctgaaagaagtagtgaaagatcaattcaaca 110  Q
    ||||||||||| | || ||||| ||||| ||| || ||||||| || || |||| |||||| ||  |  |||||||||  ||||||| ||||| ||||||    
T  21414277 caaaggatgtgaagacattgaagattgaggaattgaagagttcattagaagcacatgaattgatggtaactgaaagaaacagtgaaaaatcaactcaaca 21414178  T
Q  111 agctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaactctaaggg 188  Q
    |||  ||||||||||||||   |||||||||||  ||||||  ||||| ||||||||||| || |  |||||||||||    
T  21414177 agccctacaagttcaaactaccaagaaggatgataatgataggaagaacttcaagaaagggaagaaaaactctaaggg 21414100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 23254611 - 23254684
Alignment:
Q  91 agtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaa 164  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||| ||||| | ||||| |||||| |||||    
T  23254611 agtgaaagatcaattcaacaagccttgcaagttcaaactatgaagaaagatgattttgatagaaagaacttcaa 23254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 395
Target Start/End: Original strand, 23254770 - 23254890
Alignment:
Q  275 caagaagaaaggctttgataagaagaagatatgttgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagta 374  Q
    |||||||||||| |||||||||||||||||    || | ||| ||||| ||||||||||| | || |||||||||  || || ||||| | ||||||| |    
T  23254770 caagaagaaaggttttgataagaagaagattcagtgctttaaatgtgagaagtttggtcactttgtttctgaatgcgggtctagtaaaggaaagcaagca 23254869  T
Q  375 aagaatgaagaggaacaagct 395  Q
    ||||||| |||| ||||||||    
T  23254870 aagaatgtagagcaacaagct 23254890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 27571149 - 27571056
Alignment:
Q  289 ttgataagaagaagatatgttgttataattgtgaaaagtttggtcattatgcttctgaatgttggactggtaaacggaagcaagtaaagaatga 382  Q
    ||||||||||||||||    ||||  || ||||| || ||||| |||||||| |||||||||||| |||||||| | ||||||  |||||||||    
T  27571149 ttgataagaagaagattcagtgtttcaaatgtgagaaatttggacattatgcatctgaatgttggtctggtaaaggaaagcaatcaaagaatga 27571056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 26312563 - 26312669
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  26312563 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 26312662  T
Q  182 ctaaggg 188  Q
    |||||||    
T  26312663 ctaaggg 26312669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 39794945 - 39795051
Alignment:
Q  82 gaaagaagtagtgaaagatcaattcaacaagctttacaagttcaaactgtgaagaaggatgaatatgataaaaagaatttcaagaaaggcaaaagtaact 181  Q
    |||||||| | |||||||||||||||||||||  | |||||||||||| | || |||||||| |||||||  ||||| ||||||||||| || |  ||||    
T  39794945 gaaagaagcaatgaaagatcaattcaacaagccctgcaagttcaaactatcaaaaaggatgattatgataggaagaacttcaagaaagggaagaaaaact 39795044  T
Q  182 ctaaggg 188  Q
    |||||||    
T  39795045 ctaaggg 39795051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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