View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_14 (Length: 400)
Name: NF3198_low_14
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 87 - 365
Target Start/End: Complemental strand, 739703 - 739425
Alignment:
| Q |
87 |
taaaataaaagacaaacttaatggatgtttggtatcaggttatgttctcttcgactctccatcaattatttaatagaccaagtatatattcaaacaacct |
186 |
Q |
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| T |
739703 |
taaaataaaagacaaacttaatgtatgtttggtatcaggttatgttctcttcgactctccatcaattatttaatagaccaagtatatattcaaacaacct |
739604 |
T |
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| Q |
187 |
cgtaatctaattgcaactacatgctaacttgcatgtgttcaaattttatgcatacttcacgcaatgtacaataacttttcatgtcttaatataaaattct |
286 |
Q |
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| T |
739603 |
cgtaatctaattgcaactacatgctaacttgcatgtgttcaaattttatgcatacttcacgcaatgtacaataacttttcatgtcttaatataaaattct |
739504 |
T |
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| Q |
287 |
tgtccaacaaacttgtaattcaacaacagaaatttcttcggacaaaaggaattcaacaacataaaagcatatataaaac |
365 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
739503 |
tgtctaacaaacttgtaattcaacaacagaaatttcttcggacaaaaggaattcaacaacataaaagcatatataaaac |
739425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 739954 - 739888
Alignment:
| Q |
29 |
ttacatcttatcgaatcacgttcgatcattgcaaacacaagtctaagcacactcaccataaaataaa |
95 |
Q |
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| T |
739954 |
ttacatcttatcgaatcacgttcgatcattgcaaacacaagtctaagcacactcaccataaaataaa |
739888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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