View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_16 (Length: 390)
Name: NF3198_low_16
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 8839753 - 8840129
Alignment:
| Q |
1 |
tcaatgccggatcctaaaactcacaccgacaccggagaagagcaaccaccatcaccgcctccgctgtcaaatgaggttgatcatcaaatggaggaagaga |
100 |
Q |
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| T |
8839753 |
tcaatgccggatcctaaaactcacaccgacaccggaggagagcaaccaccatcaccgcctccgctgtcaaatgaggttgatcatcaaatggaggaagaga |
8839852 |
T |
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| Q |
101 |
agaaggaaggaaatgcagaaaccattgaggctgtgaagtctcctcctatctgtgagaaggtttcagaagacattgatcattttcttcttcatgagaaaga |
200 |
Q |
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| T |
8839853 |
acaaggaaggaaatgcagaaaccattgaggctgtgaagtctccccctatctgtgagaaggtttcagaagacattgatcattttcttctgcatgagaaaga |
8839952 |
T |
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| Q |
201 |
aggagtgtcgtttgagattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaactggagaacggaaaggaaaatgg |
300 |
Q |
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| T |
8839953 |
aggagtgtcgtttgagattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaactggagaacggaaaggaaaatgg |
8840052 |
T |
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| Q |
301 |
gaagagattatggagaaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgat |
377 |
Q |
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| T |
8840053 |
gaagagattatggagaaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgat |
8840129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 10627094 - 10627062
Alignment:
| Q |
154 |
gagaaggtttcagaagacattgatcattttctt |
186 |
Q |
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| T |
10627094 |
gagaaggtttcagaagacattgatcaatttctt |
10627062 |
T |
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