View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3198_low_17 (Length: 383)

Name: NF3198_low_17
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3198_low_17
NF3198_low_17
[»] chr1 (1 HSPs)
chr1 (1-383)||(11757772-11758148)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 11757772 - 11758148
Alignment:
Q  1 cggagacgacgtcagatctcacctgtgctacttgtttctccgagattcaaagcttctcgtgagaatctcggtttttctgttggttcagttgattcgagtt 100  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        
T  11757772 cggaaacgacgtcagatctcaccggtgctacttgtttctccgagattcaaagcttctcgtgagaatcgcggtttttctgttggttcagttgattcg---- 11757867  T
Q  101 cgagttctggttcggatttcgccggaggtgaagtttcgtgtgattcgagtagaatctctgctgttaaaggaagaacgaactcgagaagtgaaatttcgag 200  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11757868 --agttctggttcggatttcgccggaggtgaagtttcgtgtgattcgagtagaatctctgctgttaaaggaagaacgaactcgagaagtgaaatttcgag 11757965  T
Q  201 tggtgttgaatgtgttcgtagatttgagaagaggagtgagaatgaagttgaagtttcggagacttcgtgtgtggattctagttctggagtccgtagaaac 300  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11757966 tggtgttgaatgtgttcgtagatttgagaagaggaatgagaatgaagttgaagtttcggagacttcgtgtgtggattctagttctggagttcgtagaaac 11758065  T
Q  301 ttgattttgaagtttgaaaatggaaaggagaacgatgaagtttcagaagtttgtacgaaatcggaacttacttttgctgagaa 383  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11758066 ttgattttgaagtttgaaaatggaaaagagaacgatgaagtttctgaagtttgtacgaaatcggaacttacttttgctgagaa 11758148  T

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