View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3198_low_2 (Length: 591)

Name: NF3198_low_2
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3198_low_2
NF3198_low_2
[»] chr7 (4 HSPs)
chr7 (58-575)||(3928255-3928788)
chr7 (61-273)||(3929925-3930137)
chr7 (69-239)||(21317534-21317704)
chr7 (11-66)||(3928818-3928873)
[»] scaffold0197 (1 HSPs)
scaffold0197 (69-239)||(30971-31141)
[»] chr8 (8 HSPs)
chr8 (61-266)||(43479645-43479850)
chr8 (69-250)||(38799455-38799636)
chr8 (69-250)||(38821881-38822062)
chr8 (192-266)||(38807079-38807153)
chr8 (69-239)||(41943904-41944074)
chr8 (153-230)||(26592212-26592289)
chr8 (144-230)||(25865735-25865821)
chr8 (144-230)||(44343990-44344076)
[»] chr5 (7 HSPs)
chr5 (69-267)||(12546969-12547167)
chr5 (69-267)||(12531452-12531650)
chr5 (122-226)||(9866668-9866772)
chr5 (120-267)||(9894654-9894800)
chr5 (146-232)||(9870018-9870104)
chr5 (93-211)||(38735501-38735619)
chr5 (186-223)||(12538675-12538712)
[»] chr2 (3 HSPs)
chr2 (61-267)||(13576300-13576506)
chr2 (159-238)||(34562651-34562730)
chr2 (159-238)||(34571445-34571524)
[»] chr4 (2 HSPs)
chr4 (69-265)||(24860506-24860702)
chr4 (93-205)||(53290720-53290832)


Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 58 - 575
Target Start/End: Complemental strand, 3928788 - 3928255
Alignment:
Q  58 tcaaaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatct 157  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  3928788 tcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtat 3928689  T
Q  158 tgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgag 257  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3928688 tgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgag 3928589  T
Q  258 agagcttagaagatttcataaatgttgttctgttaaggtttggttcatctgttatgaatcttagcttatttttctcttgtaacaatgttccgaactacta 357  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3928588 agagcttagaagatttcataaatgttattctgttaaggtttggttcatctgttatgaatcttagcttatttttctcttgtaacaatgttccgaactacta 3928489  T
Q  358 tgtgtttttaattccagaatttcacaatgtcaatctaatatcttttgtgagataaatcttgaatgttgtggattagaaggtaaactctcgatttcttgat 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3928488 tgtgtttttaattccagaatttcacaatgtcaatctaatatcttttgcgagataaatcttgaatgttgcggattagaaggtaaactctcgatttcttgat 3928389  T
Q  458 ttttacagtcccacttagtggga----------------ctgttgttgttgtggtcgtcttgatttttacagttgattccattttgtaaaattttaaatt 541  Q
    |||||||||||||||||||||||                 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3928388 ttttacagtcccacttagtgggataaggcttggatgttgttgttgttgttgtcgtcgtcttgatttttacagttgattccattttgtaaaattttaaatt 3928289  T
Q  542 tgcttattgagaatttctgatctgatgagaatgt 575  Q
    ||||||||||||||||||||||||||||||||||    
T  3928288 tgcttattgagaatttctgatctgatgagaatgt 3928255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 61 - 273
Target Start/End: Complemental strand, 3930137 - 3929925
Alignment:
Q  61 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 160  Q
    |||||||||||| |||||||||||| |||||||||||||||||  |||| ||||  || |||||||||||| ||||||||   |||||||||||||||||    
T  3930137 aaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgt 3930038  T
Q  161 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagaga 260  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| | ||||||||  |||| ||     
T  3930037 tggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagg 3929938  T
Q  261 gcttagaagattt 273  Q
    |||||||||||||    
T  3929937 gcttagaagattt 3929925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 21317534 - 21317704
Alignment:
Q  69 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 168  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||||| ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  21317534 gttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgt 21317633  T
Q  169 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 239  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  21317634 ttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgca 21317704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 3928873 - 3928818
Alignment:
Q  11 cacagattcagaccaggaacagtcacattgcgtgaaatcagaaagtatcaaaagat 66  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  3928873 cacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagat 3928818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 30971 - 31141
Alignment:
Q  69 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 168  Q
    |||| |||||||||||| |||||||||||  ||||| ||||||||| ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  30971 gttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 31070  T
Q  169 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 239  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  31071 ttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgca 31141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 61 - 266
Target Start/End: Complemental strand, 43479850 - 43479645
Alignment:
Q  61 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 160  Q
    |||||||||||   ||||||||||| |||||||||||||||||| | |||||||  ||||||||||||||| ||||||||  ||||||||| ||||||||    
T  43479850 aaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgt 43479751  T
Q  161 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagaga 260  Q
    |||||||||||||||||| || ||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||||| | ||||| ||  |||||||     
T  43479750 tggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagg 43479651  T
Q  261 gcttag 266  Q
    ||||||    
T  43479650 gcttag 43479645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 38799455 - 38799636
Alignment:
Q  69 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 168  Q
    |||| |||||| ||||| |||||||| || |||||  ||||||||| |||||| ||||| ||| ||||||||   |||||||| ||  | |||||| | |    
T  38799455 gttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctct 38799554  T
Q  169 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcag 250  Q
    ||||||| || || |||||||| |||||||||||||||||||| ||  |||||||||| ||| | |||||| | ||||||||    
T  38799555 ttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcag 38799636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 38822062 - 38821881
Alignment:
Q  69 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 168  Q
    |||| |||||| ||||| |||||||| || |||||  ||||||||| |||||| ||||| ||| ||||||||   |||||||| ||  | |||||| | |    
T  38822062 gttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctct 38821963  T
Q  169 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcag 250  Q
    ||||||| || || |||||||| |||||||||||||||||||| ||  |||||||||| ||| | |||||| | ||||||||    
T  38821962 ttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcag 38821881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 38807079 - 38807153
Alignment:
Q  192 attcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttag 266  Q
    |||||||||||||||||||||||  |||||||||| ||| |||||||| | ||||||||  ||||||| ||||||    
T  38807079 attcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgagagggcttag 38807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 41943904 - 41944074
Alignment:
Q  69 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 168  Q
    |||| |||||| ||||| |||||||| || |||||| ||||||||| |   ||||||  |||  |||| |||   || ||||| ||||| ||||| ||||    
T  41943904 gttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgt 41944003  T
Q  169 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 239  Q
    |||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||| ||||| ||| ||||||||    
T  41944004 ttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgca 41944074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 26592212 - 26592289
Alignment:
Q  153 tatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 230  Q
    ||||||||||| |||||||| ||||| || || || ||||||||||||||| | ||||||||  ||||||||||||||    
T  26592212 tatcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatatt 26592289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 25865735 - 25865821
Alignment:
Q  144 gctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 230  Q
    ||||| || |||||||| || |||||||| ||||| ||| | ||||| |||||||||||||| || || ||| |||| |||||||||    
T  25865735 gctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatatt 25865821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 44343990 - 44344076
Alignment:
Q  144 gctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 230  Q
    ||||| || ||||| || || |||||||| ||||| ||| | |||||||||||||||||||| || || ||| |||| |||||||||    
T  44343990 gctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatatt 44344076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 69 - 267
Target Start/End: Complemental strand, 12547167 - 12546969
Alignment:
Q  69 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 168  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||| | ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  12547167 gttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 12547068  T
Q  169 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttaga 267  Q
    |||||||||| ||||| ||||| |||||||||||||| ||||||||  |||||||||||||| |||||||  ||||||| ||  |||||||||||||||    
T  12547067 ttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttaga 12546969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 69 - 267
Target Start/End: Original strand, 12531452 - 12531650
Alignment:
Q  69 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 168  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||| | ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  12531452 gttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 12531551  T
Q  169 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttaga 267  Q
    |||||||||| ||||| ||||| |||||||||||||| ||||||||  |||||||||||||| |||| ||  ||||||||||  ||||||| |||||||    
T  12531552 ttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga 12531650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 9866772 - 9866668
Alignment:
Q  122 tgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcct 221  Q
    |||||||||| ||||||||   ||| |||  |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||    
T  9866772 tgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcct 9866673  T
Q  222 aagga 226  Q
     ||||    
T  9866672 gagga 9866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 120 - 267
Target Start/End: Original strand, 9894654 - 9894800
Alignment:
Q  120 gctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgc 219  Q
    |||||||||||| |||||||| | | |||||| | | ||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||||||| ||     
T  9894654 gctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgagttactattatgg 9894753  T
Q  220 ctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttaga 267  Q
    | ||||||||| |||||||  ||||||||||  ||||||| |||||||    
T  9894754 c-aaggatattgaacttgctcgcagaatcagaggcgagagggcttaga 9894800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 9870018 - 9870104
Alignment:
Q  146 tgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaa 232  Q
    |||||| ||| |||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  9870018 tgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatattaa 9870104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 38735501 - 38735619
Alignment:
Q  93 aaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgcta 192  Q
    ||||| |||||| | ||||| | || ||||||||||||| ||||| || ||  |||||  |||||||||||||||||||||||||| || |||||| |||    
T  38735501 aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta 38735600  T
Q  193 ttcatgctaagagagttac 211  Q
    ||||||||||||| |||||    
T  38735601 ttcatgctaagagggttac 38735619  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 12538675 - 12538712
Alignment:
Q  186 tgtgctattcatgctaagagagttactattgtgcctaa 223  Q
    |||||||||||||||||||||||||||||  |||||||    
T  12538675 tgtgctattcatgctaagagagttactatcatgcctaa 12538712  T

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Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 61 - 267
Target Start/End: Original strand, 13576300 - 13576506
Alignment:
Q  61 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 160  Q
    ||||||||||||  ||||| ||||| ||||||||||| |||||| | || || | ||| |||||||||||| ||||||||   |||||||| ||||||||    
T  13576300 aaagattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgt 13576399  T
Q  161 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagaga 260  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||  | ||||||||  |||| ||     
T  13576400 tggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagg 13576499  T
Q  261 gcttaga 267  Q
    |||||||    
T  13576500 gcttaga 13576506  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 34562730 - 34562651
Alignment:
Q  159 gttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgc 238  Q
    |||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  34562730 gttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc 34562651  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 34571524 - 34571445
Alignment:
Q  159 gttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgc 238  Q
    |||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  34571524 gttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc 34571445  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 24860506 - 24860702
Alignment:
Q  69 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 168  Q
    |||| |||||||||||| ||||||||||| |||||| | |||||||  ||||||||||||||| ||||||||   |||||||| ||||| |||||  | |    
T  24860506 gttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactct 24860605  T
Q  169 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagctta 265  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||||| |||| ||  ||||||||||  ||||||| |||||    
T  24860606 ttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 53290720 - 53290832
Alignment:
Q  93 aaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgcta 192  Q
    ||||| |||||| | ||||| | || || |||||||||| ||||| || ||| |||||| |||||||||||||||||||||||||| || |||||| | |    
T  53290720 aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca 53290819  T
Q  193 ttcatgctaagag 205  Q
    |||||||||||||    
T  53290820 ttcatgctaagag 53290832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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