View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_20 (Length: 362)
Name: NF3198_low_20
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 113 - 347
Target Start/End: Complemental strand, 43183083 - 43182856
Alignment:
| Q |
113 |
taagagcagtggaatttacattatcatcataaatggtattataattgatataatccgaattttttggcttgtaccatgcttagaataacattgttccaca |
212 |
Q |
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| T |
43183083 |
taagagcagtggaatttacattatcatcataaatagtattataattgatataatccgaattttttggcttgtaccatgcttagaataacattgttccaca |
43182984 |
T |
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| Q |
213 |
atgtgacctagcttgttgcaaaatgagaattgtcccaagaggaccacgaccttttaatttccattattgcaatgaccataacaattgatcttccactctg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43182983 |
atgtgacctagcttgttgcaaaatgagaattgtcccaagaggaccacgacct-----tttccattattgcaatgaccataac--ttgatcttccactctg |
43182891 |
T |
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| Q |
313 |
tgtagggaaccaaggtctttcagtagagttgaaaa |
347 |
Q |
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| T |
43182890 |
tgtagggaaccaaggtctttcagtagagttgaaaa |
43182856 |
T |
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