View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_27 (Length: 313)
Name: NF3198_low_27
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 20413332 - 20413591
Alignment:
| Q |
8 |
tgagatgaagatcaagattacaaagaagcagttagaagagttgttaagcaaagtggacataaaagagttgagagtggaacaagttttagcccaattgatg |
107 |
Q |
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| T |
20413332 |
tgaggtgaagatcaagattacaaagaagcagttagaagagttgttaagcaaagtggacataaaagagttgagagtggaacaagttttagcccaattgatg |
20413431 |
T |
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| Q |
108 |
aaccatagcaatggctatcaatcacttcaaagatcttggagacctgcacttcaaagcatccctgaagctgattgagcttgaattagattagtttaggtat |
207 |
Q |
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| T |
20413432 |
aaccatagtaatggctacgaatcacttcaaagatcttggagaccagcacttcagagcatccctgaagctgattgagcttgaattagattagtttaggtat |
20413531 |
T |
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| Q |
208 |
atgaagttgatgaagataagtattggcttattgggtcaatcttgctttttcatttcattg |
267 |
Q |
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| T |
20413532 |
atgaagttgatgaagataagtattggcttattgggtcaatcttgctttttcatttcattg |
20413591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 20380428 - 20380654
Alignment:
| Q |
13 |
tgaagatcaagattacaaagaagcagttagaagagttgttaagcaaagtggacataaaagagttgagagtggaacaagttttagcccaattgatgaacca |
112 |
Q |
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| T |
20380428 |
tgaagatcaaaattacaaagaagcagttagaagagctgttaagcaaagtggacatgagggagttgagggtagagcaagttttagcccaattgatgaacca |
20380527 |
T |
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| Q |
113 |
tagcaatggctatcaatcacttcaaagatcttggagacctgcacttcaaagcatccctgaagctgattgagcttgaattagattagtttaggtatatgaa |
212 |
Q |
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| T |
20380528 |
tagcaatggctatcaatcacttcaaagatcttggagacctgcacttcaaagtatccctgaagtggattaagcttcatttagattaatttaggtgtatgaa |
20380627 |
T |
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| Q |
213 |
gttgatgaagataagtattggcttatt |
239 |
Q |
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| T |
20380628 |
gttgaggaagatgagtattggcctatt |
20380654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 20390342 - 20390511
Alignment:
| Q |
13 |
tgaagatcaagattacaaagaagcagttagaagagttgttaagcaaagtggacataaaagagttgagagtggaacaagttttagcccaattgatgaacca |
112 |
Q |
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||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
20390342 |
tgaagataaagattacgaagaagcagttagaagagttgttgagcaaagttgacataagggagttgagagtggagcaagttttagcccaattgatgaacca |
20390441 |
T |
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| Q |
113 |
tagcaatggctatcaatcacttcaaagatcttggagacctgcacttcaaagcatccctgaagctgattga |
182 |
Q |
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| T |
20390442 |
tagtaatggctaccaatcacttcaaagatcttggagacctgcacttcaaagcatccctgaagttgattga |
20390511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 20399430 - 20399659
Alignment:
| Q |
28 |
caaagaagcagttagaagagttgttaagcaaagtggacataaaagagttgagagtggaacaagttttagcccaattgatgaaccatagcaatggctatca |
127 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |
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| T |
20399430 |
caaagaagcaattagaagagttgttgagcaaagtggacataagggagttgagagtggaacaagttttggcccaattgatgaaccatagtaatggctacga |
20399529 |
T |
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| Q |
128 |
atcacttcaaagatcttggagacctgcacttcaaagcatccctgaagctgattgagcttgaattagattagtttaggtatatgaagttgatgaagataag |
227 |
Q |
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| T |
20399530 |
atcacttcagagatcttggagacctgcacttcagagcatccctgaacttgattgaacttcattttgattagcttaagtatatgaagttgatgaggctgag |
20399629 |
T |
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| Q |
228 |
tattggcttattgggtcaatcttgcttttt |
257 |
Q |
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||||| | || ||||||||| |||||||| |
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| T |
20399630 |
tattgaccaatagggtcaatcatgcttttt |
20399659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 20390509 - 20390557
Alignment:
| Q |
209 |
tgaagttgatgaagataagtattggcttattgggtcaatcttgcttttt |
257 |
Q |
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|||||||||||||||| ||||||| | |||||||||||||||||||| |
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| T |
20390509 |
tgaagttgatgaagattagtattgaccagttgggtcaatcttgcttttt |
20390557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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