View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_28 (Length: 310)
Name: NF3198_low_28
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 55341772 - 55342051
Alignment:
| Q |
13 |
gagatggatttccaagcaagacttgccatgcttggcgcagcnnnnnnnnnnnnntaagctggccttagcactacaggaaactgattactacttgttagac |
112 |
Q |
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| T |
55341772 |
gagatggatttccaagcaagacttgccatgcttggtgcagcaaaaaacaaaaaataagctggccttagcactacaggaaactgattactacttgttagac |
55341871 |
T |
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| Q |
113 |
gctgatacagcgtcacaaatagaatcaaataatgtaccattcctaatgaatacattgaaattgcaatctcgttccaaccaatttctgtcataacttgagc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
55341872 |
gctgatacagcgtcacaaatagaatcaaataatgtaccattcctaatgaatacattgaaattgcaatctcgttccaaccaatttcagtcataacttgagc |
55341971 |
T |
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| Q |
213 |
agccaccaagttccctataacagaaaccaggttgacagggtttgctactactgatagaaacctcttttcagtagtgaacc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55341972 |
agccaccaagttccctataacagaaaccaggttgacagggtttgctactactgacagaaacctcttttcagtagtgaacc |
55342051 |
T |
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