View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_3 (Length: 579)
Name: NF3198_low_3
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_3 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 33 - 561
Target Start/End: Original strand, 36357135 - 36357650
Alignment:
| Q |
33 |
ttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatatannnnnnnctacttat----tgtgacatccaaaaatagaaaatt |
128 |
Q |
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| T |
36357135 |
ttgaatcatttcaatgagacaattttattgttatttaagatttgtgtcatttatatatttttttctacttatatattgtgacatccaaaaaaagaaaatt |
36357234 |
T |
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| Q |
129 |
gtgacaccaatttaaattgacgaaggaaatgatggacaaatacaaagtttgagaattatgattatctcgagagagagttacattaattatgtgtgatgta |
228 |
Q |
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| T |
36357235 |
gtgacaccaatttaaattgacgaaggaaatgatggacaaatacaaagtttgagaattatgattatctcgaga--gagttacattaattatgtgtgatgta |
36357332 |
T |
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| Q |
229 |
ataacatcaatcttataaatactaataatattatttcatggtaagactataaggtcattcattattttatatttcttacaatattaagtattgtgttagc |
328 |
Q |
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| T |
36357333 |
ataacatcaatcttataaatactaataatattatttcatggtaagactataaggtcattcattattttatatttcttacaatattaagtattgtgttagc |
36357432 |
T |
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| Q |
329 |
atgtatagatcataaatgtatttgcgtcaaatttttcatggaggttttccccacgcttgacttgtttcctcaattgtctttctcttttccaccacctccc |
428 |
Q |
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| T |
36357433 |
atgtata---------------tgcgtctaatttttcatggaggttttccccacgcttgacttgtttcctcaattgtctttctcttttccaccacctccc |
36357517 |
T |
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| Q |
429 |
atctttctaccaatgagaaaacctatgttgtttccatcactttccccgtttcctttcctttttgcatttttgagaaattttacaaaatttccactacgac |
528 |
Q |
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| T |
36357518 |
atctttctaccaatgagaaaacctatgttgtttccatcactttccccctttcctttcctttttgcatttttgagaaattttacaaaatttccactacgac |
36357617 |
T |
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| Q |
529 |
cgccaccatcgggataggttttatcgtttccac |
561 |
Q |
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| T |
36357618 |
cgccaccatcgggataggttttatcgtttccac |
36357650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 39659685 - 39659629
Alignment:
| Q |
32 |
gttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatat |
88 |
Q |
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| T |
39659685 |
gttgaatcatttcaacttgacaattttatttttgtttaggatttctgtcatttatat |
39659629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 2592 - 2536
Alignment:
| Q |
32 |
gttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatat |
88 |
Q |
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| T |
2592 |
gttgaattatttcaacgaggcaattttgttattatttaggatttcagtcatttatat |
2536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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