View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_30 (Length: 295)
Name: NF3198_low_30
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 28074526 - 28074255
Alignment:
| Q |
6 |
gaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaagga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28074526 |
gaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaagga |
28074427 |
T |
|
| Q |
106 |
aggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28074426 |
aggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcct |
28074327 |
T |
|
| Q |
206 |
ccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28074326 |
ccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt |
28074255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 27916786 - 27916516
Alignment:
| Q |
6 |
gaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaagga |
105 |
Q |
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||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
27916786 |
gaaatgaagcatggagatatatatgcaatatagagaagtaatagaaaaa-tgaaacaacattttttctatcgacagaaacacaacaaggtaatggaagga |
27916688 |
T |
|
| Q |
106 |
aggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcct |
205 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||| | |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27916687 |
aggaatgaccttatgacttgttgaacatgagggctccgcaagagttttgaaaaaagagttgtgacttcttcaatgtctttagcttcgagtgaaaatgcct |
27916588 |
T |
|
| Q |
206 |
ccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt |
277 |
Q |
| |
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||| |||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |
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| T |
27916587 |
ccacattggttaagcaatttactgttctgtcactaattaagtcctgtccttgaatctttacttttttacctt |
27916516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 28017375 - 28017120
Alignment:
| Q |
22 |
atatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttttctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatga |
121 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
28017375 |
atatatatgcaatatagagaagttatagaaaaaatgaaacaacattttttctatcgacagaaacacaacaaggtaatggtaggaaagaatgaccttatga |
28017276 |
T |
|
| Q |
122 |
cttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagca |
221 |
Q |
| |
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||||||||||| |||| | || |||| ||||| |||| ||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||| |
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| T |
28017275 |
cttgttgaacgtgaggattttgtaagagtcttgcaaaatgagttgtgacttcttcaatagctttagcgtcgagtaaaaatgcctccacatcggttaagca |
28017176 |
T |
|
| Q |
222 |
tcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt |
277 |
Q |
| |
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| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |
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|
| T |
28017175 |
ttttactgttctgtcactagttaagccatgtccttgaatctttacttctttacctt |
28017120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 28035146 - 28034883
Alignment:
| Q |
6 |
gaaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatttttt-ctattgacagaaacacatcaaggtaatggaagg |
104 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||| || | || ||||| ||| | |
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| T |
28035146 |
gaaatgaagaatggagatatatatgcaatgtagagaagttatagaacaaatgaaacaacatttttttctctcgacagatgcaaaacatggtaacggagtg |
28035047 |
T |
|
| Q |
105 |
aaggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcc |
204 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28035046 |
aatgaatgaccttatgacttgttgaacgtgagggctccgcaagaatcttgaaaacagagttgtgacttcctcaatgtctttagcgtcgagtgaaaatgcc |
28034947 |
T |
|
| Q |
205 |
tccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttactt |
268 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||| ||||| ||||| || |||||||||||| |
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| T |
28034946 |
tccacattggttaagcattttactgttctgtcactagttaagccatgtcctcgaatctttactt |
28034883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 28047310 - 28047091
Alignment:
| Q |
48 |
agaaaaaatgaaacaacatttttt-ctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaa |
146 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
28047310 |
agaaaaaatgaaacaacatttttttctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcgagggctccgcaa |
28047211 |
T |
|
| Q |
147 |
gaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagcatcttactgttctgtcactaattaag |
246 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||| ||||| |
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| T |
28047210 |
gaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctgtcactagttaag |
28047111 |
T |
|
| Q |
247 |
tcatgttcttgaatctttac |
266 |
Q |
| |
|
| ||| ||||||||||||| |
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|
| T |
28047110 |
ccctgtccttgaatctttac |
28047091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 28091068 - 28090941
Alignment:
| Q |
109 |
aatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcca |
208 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||| |||| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
28091068 |
aatgaccttataactccttgaacacgagggctccgcaaaaatcttgcgaagagagttgtgacttcttcaatgtctttagcacgaagtgaaaatgcctcca |
28090969 |
T |
|
| Q |
209 |
aattggttaagcatcttactgttctgtc |
236 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
28090968 |
cattggttaagcatcttactgttctgtc |
28090941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 28001689 - 28001564
Alignment:
| Q |
109 |
aatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcca |
208 |
Q |
| |
|
||||||||||||||| |||| | |||||||| ||||||||| || |||| |||||| || |||||||||||||||| || ||||||||||||||||| |
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|
| T |
28001689 |
aatgaccttatgactccttgagtgtgagggctccgcaagaatcctgcaaaaagagttgcgagttcttcaatgtctttaacgcggagtgaaaatgcctcca |
28001590 |
T |
|
| Q |
209 |
aattggttaagcatcttactgttctg |
234 |
Q |
| |
|
||||||||||||| |||||| |||| |
|
|
| T |
28001589 |
cattggttaagcattttactgatctg |
28001564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 28001840 - 28001777
Alignment:
| Q |
7 |
aaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacattttt |
70 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28001840 |
aaatgaagcatggagatacatatgcaaggtagagaagttatagaaaaaatgaaacaatattttt |
28001777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 28091225 - 28091165
Alignment:
| Q |
7 |
aaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
67 |
Q |
| |
|
||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
28091225 |
aaatgaaacatggagatatatatgctatgtaaagaagttatagaaaaaatgaaacaacatt |
28091165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 27917483 - 27917444
Alignment:
| Q |
28 |
atgcaatgtagagaagttatagaaaaaatgaaacaacatt |
67 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27917483 |
atgcaatgtagaaaagttatagaaaaaatgaaacaacatt |
27917444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 113 - 277
Target Start/End: Complemental strand, 1439753 - 1439589
Alignment:
| Q |
113 |
accttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaatt |
212 |
Q |
| |
|
||||||| ||| |||||| ||||||||| |||||||||||| ||| |||| || ||||||||||||||||||||| ||||||||||||||| | ||| |
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| T |
1439753 |
accttataactccttgaacacgagggctccgcaagaatcttgcgaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt |
1439654 |
T |
|
| Q |
213 |
ggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttacctt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | ||| |||||| |||||||| ||||||| |
|
|
| T |
1439653 |
ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttacctt |
1439589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 1439911 - 1439851
Alignment:
| Q |
7 |
aaatgaagcaaggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
67 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1439911 |
aaatgaagcatggagatatatatgcaatgtagagaagttatagaaaaaatgaaacaacatt |
1439851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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