View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_31 (Length: 291)
Name: NF3198_low_31
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 1530103 - 1530366
Alignment:
| Q |
17 |
atttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattctattgagtggtgaaatggtgattgattattgagatgttagttatt |
116 |
Q |
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| T |
1530103 |
atttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattctattgagtggtgaaatggtgattgattattgagatgttagttatt |
1530202 |
T |
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| Q |
117 |
tttagctgtatataatttgtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530203 |
tttagctgtatataatttgtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgat |
1530302 |
T |
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| Q |
217 |
taattatgaattagttaggatggatttgcagaataatatgcactattcttatatttatgttcat |
280 |
Q |
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| T |
1530303 |
taattatgaattagttaggatggatttgcagaataatatgcactattcttatatttatgttcat |
1530366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 22476613 - 22476348
Alignment:
| Q |
17 |
atttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattct-attgagtggtgaaatggtgattgattattgagatgttagttat |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22476613 |
atttatcagagtgatccttggttctgggtatgcttgatgataatttgctggattcttattgagtggtgaaatggtgattggttattgagatgttagttat |
22476514 |
T |
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| Q |
116 |
ttttagctgtatataatttgtgtttttt-ggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttg |
214 |
Q |
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| T |
22476513 |
ttttagttgtatataatttttgtttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttg |
22476414 |
T |
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| Q |
215 |
attaattatgaattagttaggatggatttgcagaataatatgcactattcttatatttatgttcat |
280 |
Q |
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| T |
22476413 |
attaattatgaattagttaggatggatttgcagaataatatgcactattcttatatttatgttcat |
22476348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 26841877 - 26842144
Alignment:
| Q |
17 |
atttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattct-attgagtggtgaaatggtgattgattattgagatgttagttat |
115 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841877 |
atttatcagagtgatccttggttctgggtatgcttgatgataatttgctagattcttattgagtggtgaaatggtgattgattattgagatgttagttat |
26841976 |
T |
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| Q |
116 |
ttttagctgtatataatttgtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttga |
215 |
Q |
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|||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841977 |
ttttagttgtatataatctgtgttttttggaaattggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttga |
26842076 |
T |
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| Q |
216 |
ttaattatgaattagttaggatggatttgcagaataatatgcacta---ttcttatatttatgttcat |
280 |
Q |
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| T |
26842077 |
ttaattgtgaattagttaggatggatttgcagaataatatgcactattcttcttatatttatgttcat |
26842144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 29099185 - 29099432
Alignment:
| Q |
17 |
atttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattc-tattgagtggtgaaatggtgattgattattgagatgttagttat |
115 |
Q |
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||||||||||||||| |||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29099185 |
atttatcagagtgattcttgcttctggttatgcttgatgatggtttgctggattcatattgagtggtgaaatggtgattgattattgagatgttagttac |
29099284 |
T |
|
| Q |
116 |
ttttagctgtatataattt-----gtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattg |
210 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
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| T |
29099285 |
ttttagctgtatataatataatctgtgttttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgtctgtggaagagattg |
29099384 |
T |
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| Q |
211 |
tttgattaattatgaattagttaggatggatttgcagaataatatgca |
258 |
Q |
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| T |
29099385 |
cttgattaattaggaattagttaggatggatttgcagaataatatgca |
29099432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 21923066 - 21923182
Alignment:
| Q |
17 |
atttatcagagtgatccttggttctgagtatgcttgatgataatttgctggattct-attgagtggtgaaatggtgattgattattgagatgttagttat |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21923066 |
atttatcagagtgatccttggttctggttatgcttgatgataatttgttggattcttattgagtggtgaaatggtgattaattattgagatgttagttat |
21923165 |
T |
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| Q |
116 |
ttttagctgtatataat |
132 |
Q |
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||||||||||||||||| |
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| T |
21923166 |
ttttagctgtatataat |
21923182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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