View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_34 (Length: 270)
Name: NF3198_low_34
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 740478 - 740225
Alignment:
| Q |
14 |
gcacagatcctaaccatttttcctgacattctttccttctaagtaagtctcacacctcgtacaatagaaaatcaatacttcaaagttcaatttcatacta |
113 |
Q |
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| T |
740478 |
gcacagatcctaaccatttttcctaacattctttccttctaagtaagtctcacacctcgtacaatagaaaatcaatacttcaaagttcaatttcatacta |
740379 |
T |
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| Q |
114 |
gttataaaagttgattttgattaaaactaacttgaacatatttttatttgaaatagtttatgagaaagtaacttcatcaattcatttatttaatagttag |
213 |
Q |
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| T |
740378 |
gttataaaagttgattttgattaaaactaacttgaacatatttttatttgaaatagtttatgagaaagtaact---tcaattcatttatttaatagttag |
740282 |
T |
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| Q |
214 |
aatcaaaattggttttgagtatgcaactaccatagaatagtggaagatatctatcac |
270 |
Q |
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| T |
740281 |
aatcaaaattggttttgagtatgcaactaccatagaatagtggaagatatctatcac |
740225 |
T |
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