View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_43 (Length: 243)
Name: NF3198_low_43
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_43 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 5950393 - 5950617
Alignment:
| Q |
19 |
cttgtggtttagctaaaattttgcaccggttcaaagtgagttgatcttcaccatgtgaaaaccttgtacacttgtgactcatgatgggatgtttatcgtt |
118 |
Q |
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| T |
5950393 |
cttgtggtttagctaaaattttgcaccggttcaaagtgagttgatcttcaccatgtgaaaaccttgtacacttgtgactcatgatgggatgtttattgtt |
5950492 |
T |
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| Q |
119 |
tcttgtagaagccacgttatgatactggtcgtccacagaacaaaaattcaagtcgaaatatgtatatgaagagcataacgagctgtcatcatcgaacgta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
5950493 |
tcttgtagaagccacgttatgatactggtcgtccacagaacaaaaattcaagtcggaatatgtatatgaagagcataacgagctgtcataatcaaacgta |
5950592 |
T |
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| Q |
219 |
tcatctacaaaaacagtttatcagg |
243 |
Q |
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||||||||||||||||||||||||| |
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| T |
5950593 |
tcatctacaaaaacagtttatcagg |
5950617 |
T |
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