View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_48 (Length: 236)
Name: NF3198_low_48
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44374456 - 44374677
Alignment:
| Q |
1 |
atcatatccgcatctgcatagaataaccaaaaaagttgtattatataacatgatttttacttctgaataaaggagtatgtgtatggataatcatcatgca |
100 |
Q |
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| T |
44374456 |
atcatatccgcatctgcatagaataaccaaaaaagttgtattatataacatgatttttacttctgaataaaggagtatgtgtatggataatcatcatgca |
44374555 |
T |
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| Q |
101 |
acaatggt-gnnnnnnngaaacacttgttgcagaaaggctaaatttagcgagaacatacacataagcatgtatgaggttgtttaacttatgacatgtaca |
199 |
Q |
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| T |
44374556 |
acgatggtattttttttgaaacacttgttgcagaaaggctaaatttagcgagaacatacacataagcatgtttgaggttgtttaacttatgacatgtaca |
44374655 |
T |
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| Q |
200 |
taagctattttcaccttatttc |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
44374656 |
taagctattttcaccttatttc |
44374677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 52619076 - 52619042
Alignment:
| Q |
186 |
ttatgacatgtacataagctattttcaccttattt |
220 |
Q |
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| T |
52619076 |
ttatgacatgttcataagctattttcaccttattt |
52619042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 6262096 - 6262058
Alignment:
| Q |
183 |
aacttatgacatgtacataagctattttcaccttatttc |
221 |
Q |
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| T |
6262096 |
aacttatgacatgttcataagctattttcaacttatttc |
6262058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 1893275 - 1893312
Alignment:
| Q |
183 |
aacttatgacatgtacataagctattttcaccttattt |
220 |
Q |
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| T |
1893275 |
aacttatgacatgtacataagttattttcagcttattt |
1893312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 14949943 - 14949903
Alignment:
| Q |
182 |
taacttatgacatgtacataagctattttcaccttatttct |
222 |
Q |
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| T |
14949943 |
taacttatgacatgtccataagctgttttcagcttatttct |
14949903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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