View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_6 (Length: 493)
Name: NF3198_low_6
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 36675577 - 36675229
Alignment:
| Q |
19 |
aaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtc |
118 |
Q |
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| T |
36675577 |
aaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtc |
36675478 |
T |
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| Q |
119 |
caaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataatt |
218 |
Q |
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| T |
36675477 |
caaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataatt |
36675378 |
T |
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| Q |
219 |
aaggacatgaaggaaaaaattaacaacaaatgttagtattgttaatttttacgttaaaattgaaaaatgcgggaagagatttagaaataatcttacactg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675377 |
aaggacatgaaggaaaaaattaacaacaaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacactg |
36675278 |
T |
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| Q |
319 |
gagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
367 |
Q |
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| T |
36675277 |
gagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
36675229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 36685659 - 36685311
Alignment:
| Q |
19 |
aaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtc |
118 |
Q |
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| T |
36685659 |
aaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtc |
36685560 |
T |
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| Q |
119 |
caaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataatt |
218 |
Q |
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| T |
36685559 |
caaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctgcataatt |
36685460 |
T |
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| Q |
219 |
aaggacatgaaggaaaaaattaacaacaaatgttagtattgttaatttttacgttaaaattgaaaaatgcgggaagagatttagaaataatcttacactg |
318 |
Q |
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| T |
36685459 |
aaggacatgaaggaaaaaattaacaacaaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagatttagaaataatcttacactg |
36685360 |
T |
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| Q |
319 |
gagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
367 |
Q |
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| T |
36685359 |
gagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
36685311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 36675179 - 36675117
Alignment:
| Q |
417 |
attcctgaagtacatatatatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatg |
483 |
Q |
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| T |
36675179 |
attcctgaagtac----atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatg |
36675117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 42224268 - 42224459
Alignment:
| Q |
20 |
aagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtcc |
119 |
Q |
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||||| |||| ||| |||||||||| |||||| |||| || |||||||| ||||| || | |||| ||||||||||| |||| ||||| || |||| |
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| T |
42224268 |
aagagcgtgacatatatgatctcaatcacacaacctgagccgttgatggttaccacgagcacgctgtccgggtgcaccataggcagaccgtatagtgtcc |
42224367 |
T |
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| Q |
120 |
aaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctg |
211 |
Q |
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| T |
42224368 |
ataccatgcagttaacaagtgttgctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctg |
42224459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 25991738 - 25991706
Alignment:
| Q |
243 |
aacaaatgttagtattgttaatttttacgttaa |
275 |
Q |
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| T |
25991738 |
aacaaatgttagtattgttaatttttacgttaa |
25991706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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