View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_7 (Length: 485)
Name: NF3198_low_7
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 35111141 - 35110686
Alignment:
| Q |
13 |
aatattagggtttcaggttgaatcgnnnnnnncagtcatatatcatcatcccttatcctataattcatctcactgaaaaaatcaatagtgtgtgtcctat |
112 |
Q |
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| T |
35111141 |
aatattagggtttcaggttgaatcgaaaaaaacagtcatatatcatcatcccttatcctataatttatctcactgaaaaaatcaatagtgtgtgtcctat |
35111042 |
T |
|
| Q |
113 |
gaagataaaaatgagtggagagcctcatctgtcgagtagcgtggtcctatggaatggtacatacgtaacctttttcatataaatgataaaacatgataat |
212 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35111041 |
gaagatgaaaatgagtggagagcctcatccgtcgagtagcgtggtcctatgaaatggtacatacgtaacctttttcatataaatgataaaacatgataat |
35110942 |
T |
|
| Q |
213 |
ttcaactatggtcaaggttttagatccagaatcctaaggaaggaagaaagaaagaaagccacccacgtgtgatgccaattgtggattccaaatttaagct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35110941 |
ttcaactatggtcaaggttttagatccagaatcctaaggaaggaagaaagaaagaaagccacccacgtgtgatgccaattgtggattccaaatttaagct |
35110842 |
T |
|
| Q |
313 |
aatgggtctaaggtcttgtcttaatcgaaatacctctttatagtatttgtgaccggccaccttatacgtcccaacattgacaatgaaaacgacattagct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35110841 |
aatgggtctaaggtcttgtcttaatcgaaatacctctttatagtatttgtgaccggccaccttatacgtcccaacattgacaatgaaaacgacattagct |
35110742 |
T |
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| Q |
413 |
tcaaaccttacatgaataattatcaagtttgtggctagctacagtactgattggcc |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35110741 |
tcaaaccttacatgaataattatcaagtttgtggctagctacagtactgattggcc |
35110686 |
T |
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