View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3198_low_8 (Length: 479)
Name: NF3198_low_8
Description: NF3198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3198_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 53674866 - 53675128
Alignment:
| Q |
2 |
cctactgtggaactcaatgccacttttgcctccaaattaacctgataatgatgttttcatcagcattcttcgactctaatagcaaaccatattaaagtct |
101 |
Q |
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| T |
53674866 |
cctactgtggaactcaatgccacttttgcctccaaattaacctgataatgatgttttcatcagcattcttcgactctaatagcaaaccatattaaagtct |
53674965 |
T |
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| Q |
102 |
aaccattatatgacagacagggtcaactatatttttgattccctctaaaatactcttcatcttagtacttactaaaatttggtcccctccatgtctctag |
201 |
Q |
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| T |
53674966 |
aaccattatatgacagacagggtcaactatattttttattccctctaaaatactcttcatcttagtacttactaaaatttggtccactccatgtctctag |
53675065 |
T |
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| Q |
202 |
aatccatccctattcaatgtcgttttttgcggactaatcagaaggaatgcaaatcacgtaaac |
264 |
Q |
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| T |
53675066 |
aatccatccctatcgaatgtcgttttttgcagactaatcagaaggaatgcaaatcacgtaaac |
53675128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 265 - 474
Target Start/End: Original strand, 53675181 - 53675387
Alignment:
| Q |
265 |
atgtgttgcattccccctatccaataacaaaacattattttttcctcaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgt |
364 |
Q |
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| T |
53675181 |
atgtgttgcattccccctatccaataacaaaacattattttttccccaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgt |
53675280 |
T |
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| Q |
365 |
gtttgaaattaattacctgtttggaccaacaacaagtctgtgcaaattctccaagcacagatataacatatgcttttgcttgcctaagttgtgattgtct |
464 |
Q |
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| T |
53675281 |
gtttgaaattaattacctgtttggac---caacaagtctgtgcaaattctccaagcacagatataacatatgcttttgcttgcctaagttgtgattgtct |
53675377 |
T |
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| Q |
465 |
tcatctcact |
474 |
Q |
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| T |
53675378 |
tcttctcact |
53675387 |
T |
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