View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3201_high_1 (Length: 496)
Name: NF3201_high_1
Description: NF3201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3201_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 93 - 425
Target Start/End: Original strand, 45855852 - 45856183
Alignment:
| Q |
93 |
aagtctaatttgcggcggatagtagtagtgggtattggaaacttaattatgcagtaaacccagaaacagtctttgttttgtagtccttaaaagtgccttt |
192 |
Q |
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| T |
45855852 |
aagtctaatttgcgg-ggatagtagtagtgggtattggaaacttaattatgcagtaaacccagaaacagtctttgttttgtagtccttaaaagtgccttt |
45855950 |
T |
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| Q |
193 |
tcttttcacataaacatgcacaaatcaaatagaattacatagattgatgactgggtattttagttaggaatctgtacaatccaatggaaaagaaaagagc |
292 |
Q |
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| T |
45855951 |
tcttttcacataaacatgcacaaatcaaatagaattacatagattgatgactgggtattttagttaggaatctgtacaatccaatggaaaagaaaagagc |
45856050 |
T |
|
| Q |
293 |
attggaggaatcacataaatgagagagcagcaactgaagcacaatgcactctaaatatgaagtctgaaagcaaagttataattcaaagtcttcattcttg |
392 |
Q |
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| T |
45856051 |
attggaggaatcacataaatgagagagcagcaactgaagcacaatgcactctaaatatgaagtctgaaagcaaagttataattcaaagtcttcattcttg |
45856150 |
T |
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| Q |
393 |
attcttaaatgtttaaggcagggaaagtggtga |
425 |
Q |
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| T |
45856151 |
attcttaaatgtttaaggcaggtaaagtggtga |
45856183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 147 - 319
Target Start/End: Original strand, 41254729 - 41254903
Alignment:
| Q |
147 |
taaacccagaaacagtctttgttttgtagtccttaaaagtgccttttctttt--cacataaacatgcacaaatcaaatagaattacatagattgatgact |
244 |
Q |
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| T |
41254729 |
taaacccagaagcagtttttgtttttaagtccttaaaagtgctttgtttttttacacataaacatgcacaaattgaatagaattagagagattgataagt |
41254828 |
T |
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| Q |
245 |
gggtattttagttaggaatctgtacaatccaatggaaaagaaaagagcattggaggaatcacataaatgagagag |
319 |
Q |
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| T |
41254829 |
gggtgttttagcaaggaatctgtacaatccaattgaagagaaaagaacattgaaggaatctgatgaatgagagag |
41254903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 4229855 - 4229815
Alignment:
| Q |
259 |
ggaatctgtacaatccaatggaaaagaaaagagcattggag |
299 |
Q |
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| T |
4229855 |
ggaatctgtacaatccaatggaagagaaaagagcattggag |
4229815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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