View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3201_high_2 (Length: 429)
Name: NF3201_high_2
Description: NF3201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3201_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 100 - 411
Target Start/End: Complemental strand, 28872397 - 28872087
Alignment:
| Q |
100 |
tggtaaacaaacacaaaacaacttcaacattttagaaatctatcaaaatcacnnnnnnnnnnnnnataatctgtaatagacaaaccttcaaaataactac |
199 |
Q |
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| T |
28872397 |
tggtaagcaaacacaaaacaacttcaacattttaaaaatctatcaaaatcactttttttttt---ataatctgtaatagacaaaccttcaaaataactac |
28872301 |
T |
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| Q |
200 |
atttttctatcaaatcattgattaacataacaaagaactaaaattaaaacaattagaacatcaaaacactaatnnnnnnnnnnnnnn--cgaagacagaa |
297 |
Q |
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| T |
28872300 |
atttttatatcaaatcattgattaacataacaaagaactaaaattaaaacaattagaacatcaaaacactaataaaaaaaaaataaaaacgaagatagaa |
28872201 |
T |
|
| Q |
298 |
acagagtaatagcgaactcaaaaaactagtgagttaaagatgatgaaccttattgaaccaaggatcatgaagaatatcagcaccacgtttatgaaccata |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28872200 |
acagagtaatagcgaactcaaaaaactagtgagttaaagatgatgaaccttattgaaccaaggatcatgaagaatatcagcaccacgtttatgaaccata |
28872101 |
T |
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| Q |
398 |
cacggtgcaggtat |
411 |
Q |
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| T |
28872100 |
cacggtgcaggtat |
28872087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 2129814 - 2129924
Alignment:
| Q |
10 |
ataatgtctgatttctcatatatgagaagttgttttgattatttgattaggttctttagaaaaatatctttgaaaaagtgtttttctttatggtaaacaa |
109 |
Q |
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| T |
2129814 |
ataatgtctgatttctcatatatgagaagttgttttgattatttgattaggcgctttagaaaaatatctttgaaaaagtgtttttctttatggtaaacaa |
2129913 |
T |
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| Q |
110 |
acacaaaacaa |
120 |
Q |
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| T |
2129914 |
acacaaaacaa |
2129924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 12024967 - 12025016
Alignment:
| Q |
344 |
accttattgaaccaaggatcatgaagaatatcagcaccacgtttatgaac |
393 |
Q |
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| T |
12024967 |
accttgttgaaccaaggatcgtggaggatatcagcaccacgtttgtgaac |
12025016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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