View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3201_high_4 (Length: 391)
Name: NF3201_high_4
Description: NF3201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3201_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 13885652 - 13885959
Alignment:
| Q |
24 |
gaatatcagaattaatatatggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatttata |
123 |
Q |
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| T |
13885652 |
gaatatcagaattaatatatggagaacttggggctgaattgtctgttatgccataaatgctagagagggatgttgtcgatgaataaaagtcagatttata |
13885751 |
T |
|
| Q |
124 |
tgtgaagccatcagaaaaacacggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacctgagtaaattgagaggtgtcatctgagttttta |
223 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13885752 |
tgtcaagccatcagaaaaacacggttctgaaagtgaaaaagcaggacttgcacatacgctacgaacctgagtaaattgagaggtgtcatctgagttttta |
13885851 |
T |
|
| Q |
224 |
ttattctcgttgattttagttacaacagcaacttctttcatctttgaaaaactcgaatcatcgataattcgattttttccctcatgaaccctaattcgtt |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |
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| T |
13885852 |
ttattctcgttgattttagttacaacagcaacttctttcatctttgaaaaactcgaatcattgataattcgattatttccctcatgaaccctaattggtt |
13885951 |
T |
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| Q |
324 |
cacatctc |
331 |
Q |
| |
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|||||||| |
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| T |
13885952 |
cacatctc |
13885959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 1220153 - 1220198
Alignment:
| Q |
288 |
taattcgattttttccctcatgaaccctaattcgttcacatctcct |
333 |
Q |
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| T |
1220153 |
taattcgattgtttccgtcatgaaacctaattggttcacatctcct |
1220198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 29092086 - 29091915
Alignment:
| Q |
20 |
ctatgaatatcagaattaatatatggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatt |
119 |
Q |
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||||||||||| | ||||||||||||||| ||||| ||||||||| || ||||||| |||||| || ||||| | | ||||||||||| ||||||| |
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| T |
29092086 |
ctatgaatatctggattaatatatggagaacttgggactgaattgtctgtcatgccatgaatgctggagagggacgacactgatgaataaaattcagatt |
29091987 |
T |
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| Q |
120 |
tatatgtgaagccatcagaaaaacacggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacct |
191 |
Q |
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|||||| ||||| |||||||||||| ||||| ||||||| |||| |||||||||||| |||||||| |||| |
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| T |
29091986 |
tatatgacaagccgtcagaaaaacaccgttctgaaagtgacaaagtaggacttgcacacacgctatgtacct |
29091915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 31913691 - 31913648
Alignment:
| Q |
288 |
taattcgattttttccctcatgaaccctaattcgttcacatctc |
331 |
Q |
| |
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|||||||||| ||||| ||||||||||||||| ||||||||||| |
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| T |
31913691 |
taattcgattgtttccatcatgaaccctaattggttcacatctc |
31913648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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