View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3201_low_11 (Length: 207)
Name: NF3201_low_11
Description: NF3201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3201_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 45627969 - 45628150
Alignment:
| Q |
13 |
agcaaaggttcaaaaggggacagaaaaattaagctcaagcacaagctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaata |
112 |
Q |
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| T |
45627969 |
agcaaaggttcaaaaggggacagaaaaattaagctcaagcacaacctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaaca |
45628068 |
T |
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| Q |
113 |
aataatgtgt--------agaaattatgcttttgttgtacattcagatacatgacaattgaaataatggagatatgtgaatg |
186 |
Q |
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| T |
45628069 |
aaaaatgtgtctgtactgagaaattatgcttttgttgtacattcagatacatgacaattgaaataatggagatatgtgaatg |
45628150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 30784124 - 30784303
Alignment:
| Q |
15 |
caaaggttcaaaaggggacagaaaaattaagctcaagcacaagctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaataaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30784124 |
caaaggttcaaaaggggacagaaaaattaagctcaagcacaacctggtgagtatgcctcaatgacaagaattgagaatttgagtataaatgtgaaataaa |
30784223 |
T |
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| Q |
115 |
taatgtgt--------agaaattatgcttttgttgtacattcagatacatgacaattgaaataatggagatatgtgaatg |
186 |
Q |
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| T |
30784224 |
taatgtgtctgtactcagaaattctgcttttgttgtagattcagatacatgacaattgaaataatgcagatatgtgaatg |
30784303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 36321882 - 36322048
Alignment:
| Q |
14 |
gcaaaggttcaaaaggggacagaaaaattaagctcaagcacaagctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaataa |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36321882 |
gcaaaggttcaaaaggggacagaaaaatcaagctcaagcacaacctggtgaataagcatcaatgacaagaattgagaatttgagtataaatgtgaaataa |
36321981 |
T |
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| Q |
114 |
ataatgtgt--------agaaattatgcttttgttgtacattcagatacatgacaattgaaataatg |
172 |
Q |
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| T |
36321982 |
ataatgtgtctgtactcagaaattctgcttttgttgtacatttagatacatgacaattaaaataatg |
36322048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 36306529 - 36306674
Alignment:
| Q |
49 |
aagcacaagctggtgagtaagcctcaatgacaagaattgagaatttgagtataaatgtgaaataaataatgtgt--------agaaattatgcttttgtt |
140 |
Q |
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| T |
36306529 |
aagcacaacctggtgaataagcctcaatgacaagaattgagaatttgagtataaatgtgaagtaaataaagtgtttgtactcagaaattttgcttttgtt |
36306628 |
T |
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| Q |
141 |
gtacattcagatacat-gacaattgaaataatggagatatgtgaat |
185 |
Q |
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||||||| ||||| || |||| |||||| ||| ||| |||||||| |
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| T |
36306629 |
gtacatttagatatatggacagttgaaaaaatacagacatgtgaat |
36306674 |
T |
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