View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3201_low_7 (Length: 251)
Name: NF3201_low_7
Description: NF3201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3201_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 28872750 - 28872996
Alignment:
| Q |
1 |
tcaattcacctcgaattagtttaggttcgatgtcatttttggtcctgggtactgaggatttagacaaac-aataagtactatctgcgtaaaatttcaagt |
99 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
28872750 |
tcaattcacctcgaattagtttaggttcaatgtcatttttggtcctggatactgaggatttagataaacgaataagtactatctgcgtaaaatttcaagt |
28872849 |
T |
|
| Q |
100 |
ttctgattcccgttcttaaccattggtttggattta----atannnnnnnnnnnaattctctcgaaatgtaggatacaggatttcctttaactgaaagag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
28872850 |
ttctgattcccgttcttaaccattggtttggatttaatatatatattttttttgaat--tctcaaaatgtaggatacaggatttcctttaactgaaagag |
28872947 |
T |
|
| Q |
196 |
atcgtttgggtcttcgaggcctccttcctcctcgtatcatttcatttca |
244 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28872948 |
atcgtttgggtcttcgaggcctccttcctcctcgtatcatttcatttca |
28872996 |
T |
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