View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3201_low_9 (Length: 238)
Name: NF3201_low_9
Description: NF3201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3201_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41043052 - 41042830
Alignment:
| Q |
1 |
agcaagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccattcactcttataagaaaattactggttttgtgccacaggatgat |
100 |
Q |
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| T |
41043052 |
agcaagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccattcactcttataagaaaattactggttttgtgccacaggatgat |
41042953 |
T |
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| Q |
101 |
attgtacatggaaacttgacagtagaggaaaatctccgttttagcgcaagatgcaggtatctggttttccttgcagaagctactctttgaatctgaattc |
200 |
Q |
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| T |
41042952 |
attgtacatggaaacttgacagtagaggaaaatctccgttttagcgcaagatgcaggtatctggttttccttgcagaagctactctttgaatctgaattc |
41042853 |
T |
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| Q |
201 |
tatttaatatgttatatgtatgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41042852 |
tatttaatatgttatatgtatgt |
41042830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 28087377 - 28087532
Alignment:
| Q |
4 |
aagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccattcactcttataagaaaattactggttttgtgccacaggatgatatt |
103 |
Q |
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| T |
28087377 |
aagaggatgcactatgacaggctcaatttttgtcaatggaagacctgaatccattcactgttatcagaaaattgttggatatgtgccacaagatgatatt |
28087476 |
T |
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| Q |
104 |
gtacatggaaacttgacagtagaggaaaatctccgttttagcgcaagatgcaggta |
159 |
Q |
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| T |
28087477 |
gtgcatgggaacttgacggtggaggaaaatcttcgtttcagtgcaagatgcaggta |
28087532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 42553850 - 42553932
Alignment:
| Q |
38 |
aatggaaaaaatgaatccattcactcttataagaaaattactggttttgtgccacaggatgatattgtacatggaaacttgac |
120 |
Q |
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| T |
42553850 |
aatggaaggaatgaatcaattcattcctttaagaaaattattggcttcgtgccacaagatgatgtagttcatggaaacttgac |
42553932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 21492473 - 21492550
Alignment:
| Q |
83 |
tttgtgccacaggatgatattgtacatggaaacttgacagtagaggaaaatctccgttttagcgcaagatgcaggtat |
160 |
Q |
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| T |
21492473 |
tttgttccacaagatgatattgtccatggcaatttgacagtggaggagaatctatggtttagtgccagatgcaggtat |
21492550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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