View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3202_high_1 (Length: 676)
Name: NF3202_high_1
Description: NF3202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3202_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 38 - 494
Target Start/End: Original strand, 43798871 - 43799327
Alignment:
| Q |
38 |
tcttcaaattctcaattccaaccttcgaatttcacaatcaacctcacctgaatggctccggggacagctccggcgtctccatcgccatcttctatcaagc |
137 |
Q |
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| T |
43798871 |
tcttcaaattctcaattccacccttcgaatttcacaatcaacctcacctgaatggctccggcgacagctccggcgtctccatcgccatcttctatcaagc |
43798970 |
T |
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| Q |
138 |
tatcaagcttaatccgccgcacccatgcacctcacaaaattcaaaagaagctttcatactcctcctcttcctccaccttcgaggaggaggaggggaataa |
237 |
Q |
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| T |
43798971 |
tatcaagcttaatccgccgcacccatgcacctcacaaaattcaaaagaagctttcatactcctcctcttcctccaccttcgaggaggaggaggggaataa |
43799070 |
T |
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| Q |
238 |
gttactatcgcttgttaatatatataagagggctgagtacacggtggctgaggaggaggattacggtgacctcctgtgtgagcaatgtgggtccggtgaa |
337 |
Q |
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| T |
43799071 |
gttactatcgcttgttaatatatataagagggctgagtacacggtgggtgaggaggaggattacggtgacctcctgtgtgagcaatgtgggtccggtgaa |
43799170 |
T |
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| Q |
338 |
caaccggaggagctgcttttgtgtgacaaatgtgacaatggttttcatatgaaatgtgtcagaccaattgttgttcgagttccgattggtccgtggattt |
437 |
Q |
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| T |
43799171 |
caaccggaggagctgcttttgtgtgacaaatgtgacaatggttttcatatgaaatgtgtcagaccaattgttgttcgagttccgattggtccgtggattt |
43799270 |
T |
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| Q |
438 |
gccccaagtgttctgatgtgaaggtcaagaaactcaaaagtaagagattgaaattgt |
494 |
Q |
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| T |
43799271 |
gccccaagtgttctgatgtgaaggtcaagaaactcaaaagtaagagattgaaattgt |
43799327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 579 - 669
Target Start/End: Original strand, 43799406 - 43799496
Alignment:
| Q |
579 |
aatgtgttacagagctttctcagaagaaaattcttgatttcttcgggcttcgtagggattctcttttcgggaacaatcgtgcttcatctca |
669 |
Q |
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| T |
43799406 |
aatgtgttacagagctttctcagaagaaaattcttgatttcttcgggcttcgtagggattctcttttcgggaacaatcgtgcttcttctca |
43799496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 291 - 449
Target Start/End: Original strand, 43794299 - 43794457
Alignment:
| Q |
291 |
aggaggattacggtgacctcctgtgtgagcaatgtgggtccggtgaacaaccggaggagctgcttttgtgtgacaaatgtgacaatggttttcatatgaa |
390 |
Q |
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| T |
43794299 |
aggaggattacagtgactgcatgtgtgagcgatgtggatctggtgaacaacctgaggagcttttgttgtgtgacaaatgcgacaaaggttttcatatgaa |
43794398 |
T |
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| Q |
391 |
atgtgtcagaccaattgttgttcgagttccgattggtccgtggatttgccccaagtgtt |
449 |
Q |
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| T |
43794399 |
gtgtctgagaccgattctggctagagttcctattggttcatggatttgccccaagtgtt |
43794457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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