View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3202_high_2 (Length: 411)
Name: NF3202_high_2
Description: NF3202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3202_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 21 - 391
Target Start/End: Original strand, 27079112 - 27079482
Alignment:
| Q |
21 |
atgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttaaccttagactcaggatctaaaagatctg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27079112 |
atgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttcaccttagactcaggatctaaaagatctg |
27079211 |
T |
|
| Q |
121 |
cttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacagattcagtaactttacccccatt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
27079212 |
cttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataaggaaacaaactttggtgacatgacacagattcagtaactttacccccatt |
27079311 |
T |
|
| Q |
221 |
gatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcccaaaactgaagttgcaaag |
320 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27079312 |
gatccctttaacccttccaaccatgacatttttgcccgatccatttacactctcagttgatcgaacagttacatcatggcccaaaactgaagttgcaaag |
27079411 |
T |
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| Q |
321 |
tcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcacactcacc |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27079412 |
tcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatactcggtgccctctcacactcacc |
27079482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 27065395 - 27065764
Alignment:
| Q |
21 |
atgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttaaccttagactcaggatctaaaagatctg |
120 |
Q |
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||||||||||| || || | |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||| || ||||| | |
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| T |
27065395 |
atgaatgcaccatgggtggagctccaagcagttgtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccg |
27065494 |
T |
|
| Q |
121 |
cttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacagattcagtaactttacccccatt |
220 |
Q |
| |
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||||||| ||| |||| |||||||||||||| || ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
27065495 |
cttcatagacatgaacatttggaaccgagtgacagtagtataacaaataaggaaacaaactctggtgacacgatacagattcagtaacttttccaccatt |
27065594 |
T |
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| Q |
221 |
gatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcccaaaactgaagttgcaaag |
320 |
Q |
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||||| ||||| | || |||||||||| ||||| | ||||||||| ||||||| || |||||||| ||| | |||||||| ||||||||||| |
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| T |
27065595 |
tatccccttaactttacccaccatgacatccttgcccgccccatttacattctcagtggaccgaacagtaacactgtgacccaaaacagaagttgcaaaa |
27065694 |
T |
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| Q |
321 |
tcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcacactcac |
390 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||| || ||||| | ||||| |||||||| ||||||| |
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| T |
27065695 |
tcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcac |
27065764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 27052953 - 27053296
Alignment:
| Q |
21 |
atgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttaaccttagactcaggatctaaaagatctg |
120 |
Q |
| |
|
||||||||||| || || || ||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||| ||| || ||||||| | |
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| T |
27052953 |
atgaatgcaccatgagtgggactccaagcagttgtatccaagtgacagatcgcaacaccatgatttatcttcaccttagacttagggtccaaaagattcg |
27053052 |
T |
|
| Q |
121 |
cttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacagattcagtaactttacccccatt |
220 |
Q |
| |
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||||||||| |||| ||||| ||||| || || || |||||||| ||||| ||||||||||| ||||| || || || || |||| || || ||||| |
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| T |
27053053 |
cttcataaattcgaatatttggcaccgaatgacagtaatatagcaagtaaggaaacaaactttgatgacaagacactgactccataacgttcccaccatt |
27053152 |
T |
|
| Q |
221 |
gatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcccaaaactgaagttgcaaag |
320 |
Q |
| |
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||| | || || || ||||| ||||| ||| || ||||||||| ||||||| || ||||| || |||| | ||||||| |||||||||||| |
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| T |
27053153 |
tatctcctttacttgacctaccataacattgttgttcgacccatttacattctcagtggaccgaaccgtcacattgctacccaaaatagaagttgcaaag |
27053252 |
T |
|
| Q |
321 |
tcaatcatatcctcaagtgaaccaacacaacgctttgtctcacc |
364 |
Q |
| |
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|||||||| |||||||| ||||| ||||||||||| ||||||| |
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| T |
27053253 |
tcaatcatgtcctcaagcgaacctacacaacgcttgatctcacc |
27053296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 364
Target Start/End: Complemental strand, 14866544 - 14866300
Alignment:
| Q |
120 |
gcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacagattcagtaactttacccccat |
219 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||| ||||| || |||||||| || |||||||| || |||||||| ||||| || ||||| || |||| |
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| T |
14866544 |
gcttgataaacccgaaccttaggaaccgagtgacaataataaagcaaatacggaaacaaactctgatgacacgaaacagaccgggtcactttcccgccat |
14866445 |
T |
|
| Q |
220 |
tgatccctttaacccttccaaccatgacatttttgcctgatccatttacactctcagttgatcgaacagttacatcacggcccaaaactgaagttgcaaa |
319 |
Q |
| |
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| ||||| ||||||| || ||||| |||| || || ||||||||| ||||||| | ||||| |||| || |||||||| ||||||||||| |
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| T |
14866444 |
taatcccattaacccgacccaccataacatccttcttcgacccatttacattctcagtagtccgaaccaccacatttcgacccaaaaccgaagttgcaaa |
14866345 |
T |
|
| Q |
320 |
gtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacc |
364 |
Q |
| |
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||| ||||||||||||| || |||||||| | ||||||||||| |
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| T |
14866344 |
gtcgatcatatcctcaatagacccaacacatctttttgtctcacc |
14866300 |
T |
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