View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3202_high_3 (Length: 395)
Name: NF3202_high_3
Description: NF3202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3202_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 381
Target Start/End: Complemental strand, 20517327 - 20516943
Alignment:
| Q |
7 |
gaagcaaagggaaagggtggtaagtgaacaaacagaattcattttgattcacttaatgagcatatatattatttgtatgttttgttggatattaattccc |
106 |
Q |
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| T |
20517327 |
gaaggaaagggaaaggatggtaagtgaacaaacagaattcattttgattcacttaatgagcatatatattatttgtatgttttgttggatattaattccc |
20517228 |
T |
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| Q |
107 |
tatgcctctctatagatatagtagaaaagaagtgaacaacacttccctcaaac---------nnnnnnnnnnnctatcaaattcttatagttcattggtt |
197 |
Q |
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| T |
20517227 |
tatgcctctctatagatatagtagtaaagaagtgaacaacacttccctcaaacaaaaaaaaaaaaaaaaaatactatcaaattcctctagtttattggtt |
20517128 |
T |
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| Q |
198 |
taatactttaattataatttattatatctgtaacctagcatgtggcatacattttaaaattagtctattatttggataacatccactttatatgccttat |
297 |
Q |
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| T |
20517127 |
taatactttaattataat---ttatatttgtaacctagcatgtggcatacattttaaaattagtatattatttggataacatccactttatatgccttat |
20517031 |
T |
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| Q |
298 |
ttcacgtac---acttcatcttcgataacatagaaactaatcaca-ttccttaagagaaaatctaaactattagcaaaaaggaatttt |
381 |
Q |
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| T |
20517030 |
ttcatgtacactacttcatcttcgataacatagaaactattgacatttccttaaaagaaaatctaaattattagcaaaaaggaatttt |
20516943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 20511583 - 20511547
Alignment:
| Q |
226 |
tgtaacctagcatgtggcatacattttaaaattagtc |
262 |
Q |
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| T |
20511583 |
tgtaacctagcatgtggcatatattttaaaattagtc |
20511547 |
T |
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