View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3202_low_11 (Length: 222)
Name: NF3202_low_11
Description: NF3202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3202_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 10300083 - 10300211
Alignment:
| Q |
78 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
177 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10300083 |
ctacatggtaataaggatattcttaaatagcaagaagagattgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
10300182 |
T |
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| Q |
178 |
atgtataaatatttacagcataaactatg |
206 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
10300183 |
atgtataaatatttacagcatagactatg |
10300211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 10337631 - 10337759
Alignment:
| Q |
78 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
177 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10337631 |
ctacatggtaataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattccttctttctcaaattc |
10337730 |
T |
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| Q |
178 |
atgtataaatatttacagcataaactatg |
206 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10337731 |
atgtataaatatttacagcataaactatg |
10337759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 10320515 - 10320647
Alignment:
| Q |
78 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
177 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10320515 |
ctacatggtaataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctacctagcattcctcttttctcaaattc |
10320614 |
T |
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| Q |
178 |
atgtataaatattta----cagcataaactatg |
206 |
Q |
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|||||||||||| || |||||||||||||| |
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| T |
10320615 |
atgtataaatatatatatacagcataaactatg |
10320647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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