View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3202_low_5 (Length: 297)
Name: NF3202_low_5
Description: NF3202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3202_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 42190640 - 42190918
Alignment:
| Q |
1 |
tcatgtcatttaaaatacatttcataactattatgagatcggtactcatgtatatttttatttatttatatggaagcacatgagacttattagttattac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42190640 |
tcatgtcatttaaaatacatttcataactattatgagatcggtactcatgtatatttttatttatttatatggaagcacatgagacttattagttattac |
42190739 |
T |
|
| Q |
101 |
aaacacgtatagattgcatcggttagtacagacagattaaacatgtatagaaggaatgagaccaacatcacaagccaagatagatggattaattccatgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42190740 |
aaacacgtatagattgcatcggttagtacag----attaaacatgtatagaaggaatgagaccaacatcacaagccaagatagatggcttaattccatgc |
42190835 |
T |
|
| Q |
201 |
aattttgataaggcctctcacatgacaaaccaactctcattacagcagttatggactcctcaactttatgcatcccatctgtg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42190836 |
aattttgataaggcctctcacatgacaaaccaactctcattacagcagttatggactcctcaactttatgcatcccatctgtg |
42190918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 42209267 - 42209360
Alignment:
| Q |
132 |
acagattaaacatgtatagaaggaatgagaccaacatcacaagccaag-atagatggattaattccatgcaattttgataaggcctctcacatg |
224 |
Q |
| |
|
|||||||| ||| |||||| ||| || |||||||||||||||||| || ||||| | |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
42209267 |
acagattatacaagtatagcaggcatcagaccaacatcacaagcctagtatagactgcttaattccatgcaattttgataaggcttctctcatg |
42209360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 42209158 - 42209193
Alignment:
| Q |
4 |
tgtcatttaaaatacatttcataactattatgagat |
39 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42209158 |
tgtcattttaaatacatttcataactattatgagat |
42209193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University