View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3202_low_7 (Length: 264)

Name: NF3202_low_7
Description: NF3202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3202_low_7
NF3202_low_7
[»] chr6 (18 HSPs)
chr6 (1-248)||(27605096-27605344)
chr6 (8-58)||(27338450-27338500)
chr6 (8-58)||(27399190-27399240)
chr6 (125-225)||(27586215-27586312)
chr6 (1-42)||(26802199-26802240)
chr6 (2-42)||(26655750-26655790)
chr6 (2-42)||(26761721-26761761)
chr6 (1-42)||(27228995-27229036)
chr6 (1-53)||(27718764-27718816)
chr6 (1-53)||(28780889-28780941)
chr6 (160-229)||(26655598-26655669)
chr6 (160-229)||(26761569-26761640)
chr6 (123-181)||(27338532-27338586)
chr6 (123-181)||(27399272-27399326)
chr6 (1-42)||(28786039-28786080)
chr6 (123-204)||(27531647-27531724)
chr6 (1-53)||(27698878-27698929)
chr6 (1-53)||(27725230-27725281)
[»] scaffold1254 (2 HSPs)
scaffold1254 (8-58)||(302-352)
scaffold1254 (123-180)||(384-437)
[»] scaffold0419 (2 HSPs)
scaffold0419 (8-58)||(7277-7327)
scaffold0419 (123-180)||(7192-7245)
[»] chr4 (1 HSPs)
chr4 (159-247)||(18699898-18699987)
[»] scaffold0349 (3 HSPs)
scaffold0349 (1-53)||(8186-8238)
scaffold0349 (1-53)||(3807-3858)
scaffold0349 (1-53)||(14739-14790)
[»] scaffold0277 (1 HSPs)
scaffold0277 (1-53)||(14017-14069)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 27605096 - 27605344
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtctttaatataacatggagaaattgttcttaagaaatggttatttttgtcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||    
T  27605096 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtctttaatataacaaggagaaattgttcttaataaatagttattttggtcat 27605195  T
Q  101 aagtttttgcggtctgtgttga-aaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcacatactaaatatcactgta 199  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27605196 aagtttttgcggtctgtgttgacaaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcacatactaaatatcactgta 27605295  T
Q  200 ctacacttcttcttgctaaattcttcaatgccattaatgttcaactttt 248  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27605296 ctacacttcttcttgctaaattcttcaatgcgattaatgttcaactttt 27605344  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 27338450 - 27338500
Alignment:
Q  8 agaatatgaatgagtaagtttttgtggtctgtgatttggagtctttaatat 58  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27338450 agaatatgaatgagtaagtttttgtggtctgtgatgtggagtctttaatat 27338500  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 27399190 - 27399240
Alignment:
Q  8 agaatatgaatgagtaagtttttgtggtctgtgatttggagtctttaatat 58  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27399190 agaatatgaatgagtaagtttttgtggtctgtgatgtggagtctttaatat 27399240  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 27586215 - 27586312
Alignment:
Q  125 aaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcacatactaaatatcactgtacta-cacttcttcttgctaaattct 223  Q
    ||||||| ||||||||||||||| |||||    |  |||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||| ||||    
T  27586215 aaatggtatgtgaaacttcctggccactt----tgaatagccgtgtggaccaatcacatactaaatataactgtactaccgcctcttcttgctaatttct 27586310  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26802240 - 26802199
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgat 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26802240 agaatgcagaatatgaatgagtaagtttttgtggtctgtgat 26802199  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 26655790 - 26655750
Alignment:
Q  2 gaatgcagaatatgaatgagtaagtttttgtggtctgtgat 42  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26655790 gaatgcagaatatgaatgagtaagtttttgtggtctgtgat 26655750  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 26761761 - 26761721
Alignment:
Q  2 gaatgcagaatatgaatgagtaagtttttgtggtctgtgat 42  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26761761 gaatgcagaatatgaatgagtaagtttttgtggtctgtgat 26761721  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27229036 - 27228995
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgat 42  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  27229036 agaatgcagaatatgaatgagtatgtttttgtggtatgtgat 27228995  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27718764 - 27718816
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 53  Q
    |||||||||||||||||||||| | |||||||| |||||||| || |||||||    
T  27718764 agaatgcagaatatgaatgagtgaatttttgtgttctgtgatgtgaagtcttt 27718816  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28780941 - 28780889
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 53  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||  |||||||    
T  28780941 agaattcagaatatgaatgagtttgtttttgtggtctgtgatttaaagtcttt 28780889  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 26655669 - 26655598
Alignment:
Q  160 tatagccgtgtggacc-aatcacatactaaatatcactgtac-tacacttcttcttgctaaattcttcaatg 229  Q
    |||||||||||||||| ||||||||||||||||||| ||||| | ||| | ||||||| || ||||||||||    
T  26655669 tatagccgtgtggacccaatcacatactaaatatcattgtacttccacctattcttgcaaatttcttcaatg 26655598  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 26761640 - 26761569
Alignment:
Q  160 tatagccgtgtggacc-aatcacatactaaatatcactgtac-tacacttcttcttgctaaattcttcaatg 229  Q
    |||||||||||||||| ||||||||||||||||||| ||||| | ||| | ||||||| || ||||||||||    
T  26761640 tatagccgtgtggacccaatcacatactaaatatcattgtacttccacctattcttgcaaatttcttcaatg 26761569  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 27338532 - 27338586
Alignment:
Q  123 aaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcac 181  Q
    ||||||| ||||||||||||| ||| ||||||    |||||||||||||||||||||||    
T  27338532 aaaaatgatttgtgaaacttcttggccacttc----ctatagccgtgtggaccaatcac 27338586  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 27399272 - 27399326
Alignment:
Q  123 aaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcac 181  Q
    ||||||| ||||||||||||| ||| ||||||    |||||||||||||||||||||||    
T  27399272 aaaaatgatttgtgaaacttcttggccacttc----ctatagccgtgtggaccaatcac 27399326  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28786080 - 28786039
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgat 42  Q
    ||||| ||||||||||||||||  ||||||||||||||||||    
T  28786080 agaattcagaatatgaatgagtttgtttttgtggtctgtgat 28786039  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 27531647 - 27531724
Alignment:
Q  123 aaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatcacatactaaatatcactgtactaca 204  Q
    ||||||| | |||||||||||||||  |||||||||    |||||||||||||||||| | | |||||| || |||||||||    
T  27531647 aaaaatgatatgtgaaacttcctggcaacttcctat----agccgtgtggaccaatcatacattaaataacattgtactaca 27531724  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27698878 - 27698929
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 53  Q
    ||||||||||||||||||||||||  ||||||| |||||||| || |||||||    
T  27698878 agaatgcagaatatgaatgagtaa-attttgtgttctgtgatgtgaagtcttt 27698929  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27725230 - 27725281
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 53  Q
    ||||||||||||||||||| |||| |||||||||||||| || || |||||||    
T  27725230 agaatgcagaatatgaatg-gtaaatttttgtggtctgttatgtgaagtcttt 27725281  T

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Target: scaffold1254 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 302 - 352
Alignment:
Q  8 agaatatgaatgagtaagtttttgtggtctgtgatttggagtctttaatat 58  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  302 agaatatgaatgagtaagtttttgtggtctgtgatgtggagtctttaatat 352  T

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Target: scaffold1254; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 384 - 437
Alignment:
Q  123 aaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatca 180  Q
    ||||||||| ||||||||||| ||| ||||||    ||||||||||||||||||||||    
T  384 aaaaatggtctgtgaaacttcttggccacttc----ctatagccgtgtggaccaatca 437  T

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Target: scaffold0419 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 7327 - 7277
Alignment:
Q  8 agaatatgaatgagtaagtttttgtggtctgtgatttggagtctttaatat 58  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7327 agaatatgaatgagtaagtttttgtggtctgtgatgtggagtctttaatat 7277  T

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Target: scaffold0419; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 7245 - 7192
Alignment:
Q  123 aaaaatggtttgtgaaacttcctggtcacttcctatctatagccgtgtggaccaatca 180  Q
    ||||||||| ||||||||||| ||| ||||||    ||||||||||||||||||||||    
T  7245 aaaaatggtctgtgaaacttcttggccacttc----ctatagccgtgtggaccaatca 7192  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 18699898 - 18699987
Alignment:
Q  159 ctatagccgtgtggaccaatcacatactaaatatcactgtact-acacttcttcttgctaaattcttcaatgccattaatgttcaacttt 247  Q
    |||||||||||||||||||||||| | |||||| || | ||||  ||| |||||||||||| ||||||||||  |||  |||||||||||    
T  18699898 ctatagccgtgtggaccaatcacacattaaataacattctactgccacatcttcttgctaatttcttcaatgtgattgctgttcaacttt 18699987  T

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Target: scaffold0349 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8186 - 8238
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 53  Q
    |||||||||||||||||||||| | |||||||| |||||||| || |||||||    
T  8186 agaatgcagaatatgaatgagtgaatttttgtgttctgtgatgtgaagtcttt 8238  T

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Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3807 - 3858
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 53  Q
    ||||||||||||||||||| |||| |||||||||||||| || || |||||||    
T  3807 agaatgcagaatatgaatg-gtaaatttttgtggtctgttatgtgaagtcttt 3858  T

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Target: scaffold0349; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 14739 - 14790
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 53  Q
    ||||||||||||||||||||||||  ||||||| |||||||| || |||||||    
T  14739 agaatgcagaatatgaatgagtaa-attttgtgttctgtgatgtgaagtcttt 14790  T

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Target: scaffold0277 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 14017 - 14069
Alignment:
Q  1 agaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 53  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||  |||||||    
T  14017 agaattcagaatatgaatgagtttgtttttgtggtctgtgatttaaagtcttt 14069  T

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