View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3203_high_10 (Length: 246)

Name: NF3203_high_10
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3203_high_10
NF3203_high_10
[»] chr7 (3 HSPs)
chr7 (21-246)||(7313411-7313636)
chr7 (45-190)||(42337458-42337601)
chr7 (45-114)||(39981856-39981925)
[»] chr2 (6 HSPs)
chr2 (21-246)||(34387540-34387761)
chr2 (45-186)||(33075575-33075714)
chr2 (69-186)||(3148304-3148421)
chr2 (45-186)||(27848710-27848849)
chr2 (45-121)||(45700349-45700425)
chr2 (45-123)||(28610778-28610856)
[»] chr1 (9 HSPs)
chr1 (21-242)||(24038713-24038934)
chr1 (21-246)||(52143815-52144040)
chr1 (23-190)||(29182624-29182791)
chr1 (32-186)||(43915817-43915971)
chr1 (45-186)||(16276508-16276647)
chr1 (45-186)||(30106650-30106791)
chr1 (45-121)||(5612592-5612668)
chr1 (45-121)||(26286944-26287020)
chr1 (32-135)||(8051450-8051552)
[»] chr8 (4 HSPs)
chr8 (21-190)||(39581122-39581291)
chr8 (21-190)||(44066362-44066531)
chr8 (45-186)||(45021179-45021318)
chr8 (191-246)||(39581341-39581396)
[»] chr4 (4 HSPs)
chr4 (21-190)||(31183468-31183632)
chr4 (45-120)||(1520328-1520403)
chr4 (45-186)||(56113286-56113425)
chr4 (190-246)||(31183363-31183419)
[»] chr3 (3 HSPs)
chr3 (34-186)||(22509311-22509463)
chr3 (45-186)||(37087480-37087619)
chr3 (45-121)||(54749611-54749687)
[»] chr5 (1 HSPs)
chr5 (45-190)||(4533505-4533648)
[»] chr6 (2 HSPs)
chr6 (36-194)||(3488935-3489087)
chr6 (45-190)||(15977001-15977144)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 7313411 - 7313636
Alignment:
Q  21 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 120  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7313411 tggtgcttatgaccatcatttataaaacaatatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 7313510  T
Q  121 tatgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattaccatcatgtttggatgagcttgctccggtgata 220  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  7313511 tctgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattaccaccatatttggatgagcttgctccggtgata 7313610  T
Q  221 accacaccgcaaaacataaccaccat 246  Q
    ||||||||| ||||||| ||||||||    
T  7313611 accacaccggaaaacatcaccaccat 7313636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 42337458 - 42337601
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||||| | ||| |||| |||| ||||||||||||||  ||| |||||||| | ||| |||    
T  42337458 aaacaaaatacataatatttattcacccttccttctctatctcat-cataagtttatttttggattggagatattt--tgagttttcaaaccaccacctt 42337554  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaattacca 190  Q
     |||||||||| | | ||||||||||  ||||||||| |||||||||    
T  42337555 cattgttagatctagaccaccacaaaacgtttttcgataaattacca 42337601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 39981856 - 39981925
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggag 114  Q
    ||||||||||||||||||| | | ||||||| |||| |||||| |||| ||||| |||||| ||| ||||    
T  39981856 aaacaaaatacataatattcaccctctcttcgttctctatctcttcctgaaattaaattttagataggag 39981925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 34387761 - 34387540
Alignment:
Q  21 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34387761 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 34387662  T
Q  121 tatgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattaccatcatgtttggatgagcttgctccggtgata 220  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  34387661 tatgatttttcaaacgccatctttattgt----tattgtccaccacaaattgttttttgacaaattaccaccatgtttggatgagcttgctccggtgata 34387566  T
Q  221 accacaccgcaaaacataaccaccat 246  Q
    ||||||||| ||||||| ||||||||    
T  34387565 accacaccggaaaacatcaccaccat 34387540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 33075575 - 33075714
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||||| | |||||||| |||| ||||||||||||||  ||| |||||||| | ||| |||    
T  33075575 aaacaaaatacataatatttattcacccttccttctctatctcat-cataaatttatttttggattggagatattt--tgagttttcaaaccaccacctt 33075671  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
     |||||||||| | | ||||||||||  |||||||||||||||    
T  33075672 cattgttagatctagaccaccacaaaacgtttttcgacaaatt 33075714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 3148304 - 3148421
Alignment:
Q  69 tctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaac-gccatctttattgttagatattgtccaccaca 167  Q
    |||||||||||| |||||||| | |||||||| |||| ||||||| ||||||| ||| ||||||||| |||| ||| |||||||||| ||| | ||||||    
T  3148304 tctcttccttctctatctcat-cataaatttatttttcgattggaaatattttttgagttttcaaactgccaccttcattgttagatcttgactaccaca 3148402  T
Q  168 aattgtttttcgacaaatt 186  Q
    || |||||||||| |||||    
T  3148403 aaatgtttttcgaaaaatt 3148421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 27848710 - 27848849
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||| | | |||||||| |||| ||||||||||||||  ||| |||||||| | ||| |||    
T  27848710 aaacaaaatacataatatttattcacccttccttctctatctc-ttcataaatttatttttggattggagatattt--tgagttttcaaaccaccacctt 27848806  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
     |||||||||| | | ||||||||||  |||||||||||||||    
T  27848807 cattgttagatctagaccaccacaaaacgtttttcgacaaatt 27848849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 45700425 - 45700349
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatatttt 121  Q
    ||||||||||||||||||| | | ||||||| |||| |||||| |||| ||||| |||||||||| ||||| |||||    
T  45700425 aaacaaaatacataatattcaccctctcttcgttctctatctcttcctgaaattaaatttttgataggagacatttt 45700349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 28610856 - 28610778
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttat 123  Q
    |||||||||||||||| |  ||  ||||||| |||| |||||||| || |||||||||||| ||| |||||||| ||||    
T  28610856 aaacaaaatacataatctacatactctcttctttctctatctcattctgaaatttaattttggatcggagatatattat 28610778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 24038713 - 24038934
Alignment:
Q  21 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038713 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 24038812  T
Q  121 tatgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattaccatcatgtttggatgagcttgctccggtgata 220  Q
    | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  24038813 tctgatttttcaaacgtcctctttattgttagatattgtccaccacaaattgtttttcgacaaattaccaccatgtttggatgagcttgctccagtgata 24038912  T
Q  221 accacaccgcaaaacataacca 242  Q
    | ||||||| ||||||| ||||    
T  24038913 agcacaccggaaaacatcacca 24038934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 52144040 - 52143815
Alignment:
Q  21 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 120  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52144040 tggttcttatgaccaccatttataaaataaagtacataatatttatcatctcttccttctatatctcatccttaaatttagtttttgattggagatattt 52143941  T
Q  121 tatgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattaccatcatgtttggatgagcttgctccggtgata 220  Q
    | |||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  52143940 tttgatttttcaaacgccatttttattgttagatattgtccaccactaatagattttcgacaaattaccaccatgtttgaatgagcttgctccggtgata 52143841  T
Q  221 accacaccgcaaaacataaccaccat 246  Q
    ||||||||| |||||||  |||||||    
T  52143840 accacaccggaaaacatcgccaccat 52143815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 29182624 - 29182791
Alignment:
Q  23 gtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatatttta 122  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||||| |||| |||||||||     
T  29182624 gtgcttctgaccaccatttatcaaacaaaatacataatatttatcatctcttccttctatatatcattattaaatttacttttttattgaagatattttc 29182723  T
Q  123 tgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattacca 190  Q
    ||| ||||||||||| ||||||||||| ||||   ||||||||||||||||| |||||||||||||||    
T  29182724 tgagttttcaaacgctatctttattgtcagattccgtccaccacaaattgttcttcgacaaattacca 29182791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 43915971 - 43915817
Alignment:
Q  32 accaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttc 131  Q
    |||| ||||| | ||||||||||||||||||| || ||||||||||||| ||||||||   |||||||| |||| ||||||| ||||||| ||| |||||    
T  43915971 accatcatttgtcaaacaaaatacataatattcattatctcttccttctctatctcat-tataaatttatttttcgattggaaatattttttgagttttc 43915873  T
Q  132 aaa-cgccatctttattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
    ||| ||||| ||| |||||||||| ||| | |||||||| ||||||||||||||||    
T  43915872 aaaccgccaccttcattgttagatcttgactaccacaaaatgtttttcgacaaatt 43915817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 16276647 - 16276508
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||||| | |||||||| |||| ||||||||||||||  ||| |||||||| | ||| |||    
T  16276647 aaacaaaatacataatatttattcacccttccttctctatctcat-cataaatttatttttggattggagatattt--tgagttttcaaaccaccacctt 16276551  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
     |||||||||| | |  |||||||||  |||||||||||||||    
T  16276550 cattgttagatctagatcaccacaaaacgtttttcgacaaatt 16276508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 30106791 - 30106650
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||| ||  |||||||||||| |||||||| | |||||||| |||| ||||| | ||||||| ||| |||||||| ||||| |||    
T  30106791 aaacaaaatacataatattcattctctcttccttctctatctcat-cataaatttatttttcgattgaaaatattttttgagttttcaaaccgccacctt 30106693  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
     |||| ||||| ||| | |||| | | |||||||| |||||||    
T  30106692 cattgatagatcttgactaccagagaatgtttttcaacaaatt 30106650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 5612668 - 5612592
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatatttt 121  Q
    ||||||||||| |||||||  |||||||||  |||| ||||||||||| |||||||||||| ||| ||||| |||||    
T  5612668 aaacaaaatacgtaatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagacatttt 5612592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 26286944 - 26287020
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatatttt 121  Q
    ||||||||| |||||||||  |||||||||  |||| ||||||||||| |||||||||||| ||| ||||| |||||    
T  26286944 aaacaaaattcataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagacatttt 26287020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 8051450 - 8051552
Alignment:
Q  32 accaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttc 131  Q
    |||| ||||| | ||||||||||||||||||| ||   | ||||||||| ||||||||| | ||||||| |||| ||| ||||||||||| ||| |||||    
T  8051450 accatcatttgtcaaacaaaatacataatattcattcacccttccttctctatctcatcat-aaatttatttttggataggagatattttttgagttttc 8051548  T
Q  132 aaac 135  Q
    ||||    
T  8051549 aaac 8051552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 39581122 - 39581291
Alignment:
Q  21 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39581122 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttattttttgattggagatattt 39581221  T
Q  121 tatgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattacca 190  Q
    | |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||    
T  39581222 tctgatttttcaaacgccatctttattgttagatatcgtccaccacaaattgcttttcgacatattacca 39581291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 44066531 - 44066362
Alignment:
Q  21 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 120  Q
    ||||| || |||||||| ||||| ||||||||||||||||||| ||| | |||||||||| ||||||||||||||||||| |||||||| | || |||||    
T  44066531 tggtgtttttgaccaccttttatcaaacaaaatacataatattcatcgtatcttccttctctatctcatccttaaatttattttttgatcgaaggtattt 44066432  T
Q  121 tatgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattacca 190  Q
    | ||| |||  || |||||  |||||||||| || ||| |||||| |||||||||||||| | |||||||    
T  44066431 tttgagtttcaaaccgccacttttattgttaaatcttgaccaccataaattgtttttcgatagattacca 44066362  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 45021318 - 45021179
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||||| | |||||||| |||| ||||||||||||||  ||| |||||||| | ||  |||    
T  45021318 aaacaaaatacataatatttattcacccttccttctctatctcat-cataaatttatttttggattggagatattt--tgagttttcaaaccaccgcctt 45021222  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
     |||||||||| | | ||||||||||  ||||||| |||||||    
T  45021221 cattgttagatctagaccaccacaaaacgtttttcaacaaatt 45021179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 39581341 - 39581396
Alignment:
Q  191 tcatgtttggatgagcttgctccggtgataaccacaccgcaaaacataaccaccat 246  Q
    ||||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||||    
T  39581341 tcatgtttggatgagcttgctccggcgataaccgcactggaaaacatcaccaccat 39581396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 31183632 - 31183468
Alignment:
Q  21 tggtgcttatgaccaccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 120  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31183632 tggtgcttatgaccaccatttataaaatgaaatacataatatttatcatctcttccttctatatctcatccttaaatttattttttgattggagatattt 31183533  T
Q  121 tatgatttttcaaacgccatctttattgttagatattgtccaccacaaattgtttttcgacaaattacca 190  Q
    | |||||||||||||||||||||||| ||||||||     ||||||||||||||||||||||||||||||    
T  31183532 tctgatttttcaaacgccatctttatagttagata-----caccacaaattgtttttcgacaaattacca 31183468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 1520328 - 1520403
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattt 120  Q
    |||||||||||||||||||  |||||||||  |||| ||||||||||| |||||||||||| ||| ||||| ||||    
T  1520328 aaacaaaatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagacattt 1520403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 56113425 - 56113286
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||||| | | |||||| |||| ||||||||||||||  ||| |||||||| | ||| |||    
T  56113425 aaacaaaatacataatatttattcacccttccttctctatctcat-catgaatttatttttggattggagatattt--tgagttttcaaaccaccacctt 56113329  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
     |||||||||| | | ||||||||||   ||||||||||||||    
T  56113328 cattgttagatctagaccaccacaaaacatttttcgacaaatt 56113286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 31183419 - 31183363
Alignment:
Q  190 atcatgtttggatgagcttgctccggtgataaccacaccgcaaaacataaccaccat 246  Q
    |||||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||||    
T  31183419 atcatgtttggatgagcttgctccggcgataaccgcacaggaaaacatcaccaccat 31183363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 22509311 - 22509463
Alignment:
Q  34 caccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaa 133  Q
    |||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||| ||| |||| ||||||||||| ||| |||||||    
T  22509311 caccatttatcaaacaaaatacttaatattcatcatctcttccttctctatctcatcattaaatttattttgtgatcggagatattttttgagttttcaa 22509410  T
Q  134 acgccatctttattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
     || |  ||| |||||||||| ||| | |||||| |  |||||||||||||||    
T  22509411 ccgtcgccttcattgttagatcttgacaaccacataacgtttttcgacaaatt 22509463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 37087480 - 37087619
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||||| | |||||||| |||| ||||| ||||||||  ||| |||||||| | ||| |||    
T  37087480 aaacaaaatacataatatttattcacccttccttctctatctcat-cataaatttatttttggattgaagatattt--tgagttttcaaaccaccacctt 37087576  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaatt 186  Q
     |||||||||| | | ||||||||||  |||||||||||||||    
T  37087577 cattgttagatctagaccaccacaaaacgtttttcgacaaatt 37087619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 54749611 - 54749687
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatatttt 121  Q
    |||||||||||||||||||  |||||||||  |||| ||||||||||| |||||||||||| ||| ||||| |||||    
T  54749611 aaacaaaatacataatattcgtcatctctttgttctctatctcatcctaaaatttaattttggatcggagacatttt 54749687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 4533505 - 4533648
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||||| | |||||||| |||| ||||||||||||||  ||| |||||||| | ||| |||    
T  4533505 aaacaaaatacataatatttattcacccttccttctctatctcat-cataaatttatttttggattggagatattt--tgagttttcaaaccaccacctt 4533601  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaattacca 190  Q
     |||||||||| | | ||||||||||  |||||||||||||||||||    
T  4533602 cattgttagatctagaccaccacaaaacgtttttcgacaaattacca 4533648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 3489087 - 3488935
Alignment:
Q  36 ccatttataaaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaac 135  Q
    |||||||| ||||||||||||||||||   |||||| |||||||| ||||||||  |||||   ||  ||| |  |||||||||    || |||||||||    
T  3489087 ccatttatcaaacaaaatacataatatccttcatcttttccttctctatctcattattaaa---aaacttttagcggagatatt----gagttttcaaac 3488995  T
Q  136 -gccatctttattgttagatattgtccaccacaaattgtttttcgacaaattaccatcat 194  Q
     ||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||    
T  3488994 cgccatctttattgttagatcttgaccacaacaaactgtttttcgacaaattaccatcat 3488935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 15977001 - 15977144
Alignment:
Q  45 aaacaaaatacataatatttatcatctcttccttctatatctcatccttaaatttaatttttgattggagatattttatgatttttcaaa-cgccatctt 143  Q
    ||||||||||||||||||||||   | ||||||||| |||||||| | ||| |||| |||| ||||||||||||||  ||| |||||||| | ||| |||    
T  15977001 aaacaaaatacataatatttattcacccttccttctctatctcat-cataagtttatttttggattggagatattt--tgagttttcaaaccaccacctt 15977097  T
Q  144 tattgttagatattgtccaccacaaattgtttttcgacaaattacca 190  Q
     |||||||||| | | ||||||||||  ||||||||| |||||||||    
T  15977098 cattgttagatttagaccaccacaaaacgtttttcgataaattacca 15977144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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