View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3203_high_11 (Length: 212)

Name: NF3203_high_11
Description: NF3203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3203_high_11
NF3203_high_11
[»] chr3 (16 HSPs)
chr3 (43-212)||(3357776-3357948)
chr3 (43-204)||(3200508-3200672)
chr3 (1-47)||(3355912-3355958)
chr3 (1-47)||(3723010-3723056)
chr3 (45-102)||(30990068-30990125)
chr3 (43-122)||(3304352-3304431)
chr3 (8-47)||(3309186-3309225)
chr3 (45-102)||(22104357-22104414)
chr3 (45-102)||(22179051-22179108)
chr3 (43-102)||(3221878-3221937)
chr3 (43-102)||(3280660-3280719)
chr3 (45-104)||(22052378-22052437)
chr3 (45-102)||(21936787-21936844)
chr3 (45-102)||(22010468-22010525)
chr3 (45-102)||(22034163-22034220)
chr3 (45-102)||(22186634-22186691)
[»] chr1 (2 HSPs)
chr1 (51-146)||(41947633-41947731)
chr1 (43-102)||(49386842-49386901)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 3357776 - 3357948
Alignment:
Q  43 acatcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttcatttgctccccctctt---tcatctgcagcctttgtgtctg 139  Q
    |||||||||||||||||||||||||| || |||||| | ||||| ||||||| |||||| || ||||| |||| |   ||||| |||||| |||||||||    
T  3357776 acatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgttggctcctcctcctccttcatcagcagcccttgtgtctg 3357875  T
Q  140 catccttaagtgataattggatgttctcaagttcatccttgatgtctttgaagtcttcctcaatcaatgtcag 212  Q
    ||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||| |  |||||||||||||||    
T  3357876 catccttgagtgagaattggatgatctcaagttcatctttgatgtctttgaagtatctctcaatcaatgtcag 3357948  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 3200672 - 3200508
Alignment:
Q  43 acatcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttcatttgctccccctctt---tcatctgcagcctttgtgtctg 139  Q
    |||||||||||||||||||||||||| || |||||| | ||||| ||||||| |||||| || ||||| |||| |   ||||| ||||||||||||||||    
T  3200672 acatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgttggctcctcctcctccttcatcagcagcctttgtgtctg 3200573  T
Q  140 catccttaagtgataattggatgttctcaagttcatccttgatgtctttgaagtcttcctcaatc 204  Q
    ||||||| ||||| | ||| ||| ||||||||||||  |||||||||||||| |||  |||||||    
T  3200572 catccttgagtgaaacttgaatgctctcaagttcatatttgatgtctttgaattctctctcaatc 3200508  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3355912 - 3355958
Alignment:
Q  1 tcgatttgcttccaaaaagtaaagcttctgtaatgacttcaaacatc 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3355912 tcgatttgcttccaaaaagtaaagtttctgtaatgacttcaaacatc 3355958  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3723056 - 3723010
Alignment:
Q  1 tcgatttgcttccaaaaagtaaagcttctgtaatgacttcaaacatc 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3723056 tcgatttgcttccaaaaagtaaagtttctgtaatgacttcaaacatc 3723010  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 30990068 - 30990125
Alignment:
Q  45 atcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    ||||||||||||||||| ||||||||| | |||| | |||||||||||||||||||||    
T  30990068 atcttctatgcgaaaagctgcttccctaacctgcttcacccatgttttgactccttca 30990125  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 3304352 - 3304431
Alignment:
Q  43 acatcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttcatttgctccccctctttcatc 122  Q
    ||||||||||||||||||||| |||| || |  ||| | ||||||||||||||||||||||| | ||| |||| ||||||    
T  3304352 acatcttctatgcgaaaagatacttctcttacttgcttcacccatgttttgactccttcattggttcctcctccttcatc 3304431  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 3309186 - 3309225
Alignment:
Q  8 gcttccaaaaagtaaagcttctgtaatgacttcaaacatc 47  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  3309186 gcttccaaaaagtaaagcttctgtaatgacttcaagcatc 3309225  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 22104414 - 22104357
Alignment:
Q  45 atcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    ||||||||||||||||| |||| |||| || ||| | |||||||||||||||||||||    
T  22104414 atcttctatgcgaaaagctgctaccctaagttgcttcacccatgttttgactccttca 22104357  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 22179108 - 22179051
Alignment:
Q  45 atcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    ||||||||||||||||| |||| |||| || ||| | |||||||||||||||||||||    
T  22179108 atcttctatgcgaaaagctgctaccctaagttgcttcacccatgttttgactccttca 22179051  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 3221878 - 3221937
Alignment:
Q  43 acatcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    |||||||||||| ||||||||||||| || |||||| | ||||| ||||| |||||||||    
T  3221878 acatcttctatgtgaaaagatgcttctcttagctgcttcacccaagttttaactccttca 3221937  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 3280660 - 3280719
Alignment:
Q  43 acatcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    ||||||||||| |||||||||||||| || |||||| | ||||| ||||| |||||||||    
T  3280660 acatcttctatacgaaaagatgcttctcttagctgcttcacccaagttttaactccttca 3280719  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 22052437 - 22052378
Alignment:
Q  45 atcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttcatt 104  Q
    ||||||||||||||||| ||| ||||| || ||| | |||||| ||||||||||||||||    
T  22052437 atcttctatgcgaaaagctgcctccctaagttgcttcacccatattttgactccttcatt 22052378  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 21936844 - 21936787
Alignment:
Q  45 atcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    ||||||||||| ||||| ||||||||| |||||| | ||||| ||||| |||||||||    
T  21936844 atcttctatgcaaaaagctgcttccctaagctgcttcacccaagttttaactccttca 21936787  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 22010525 - 22010468
Alignment:
Q  45 atcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    |||||||||| |||||| ||||||||| || ||| | |||||| ||||||||||||||    
T  22010525 atcttctatgtgaaaagctgcttccctaagttgcttcacccatattttgactccttca 22010468  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 22034220 - 22034163
Alignment:
Q  45 atcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    ||||||||||||||||| ||| ||||| || ||| | |||||| ||||||||||||||    
T  22034220 atcttctatgcgaaaagctgcctccctaagttgcttcacccatattttgactccttca 22034163  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 22186691 - 22186634
Alignment:
Q  45 atcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    |||||||||| |||||| ||||||||| || ||| | |||||| ||||||||||||||    
T  22186691 atcttctatgtgaaaagctgcttccctaagttgcttcacccatattttgactccttca 22186634  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 41947633 - 41947731
Alignment:
Q  51 tatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca---tttgctccccctctttcatctgcagcctttgtgtctgcatcctt 146  Q
    ||||||||||||||||||  |||||||| | |||||||||||||||||||||   | | ||||  ||| ||||||  ||||| ||||||||||||||||    
T  41947633 tatgcgaaaagatgcttctttcagctgcttcacccatgttttgactccttcagcatatcctccttctccttcatcaacagcccttgtgtctgcatcctt 41947731  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 49386842 - 49386901
Alignment:
Q  43 acatcttctatgcgaaaagatgcttccctcagctgccttacccatgttttgactccttca 102  Q
    |||||||||||||||||||||||||| || |||| | | ||||| ||| |||||||||||    
T  49386842 acatcttctatgcgaaaagatgcttctctaagctacttcacccaagttatgactccttca 49386901  T

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